Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    30   0.48 
U20861-7|AAZ32814.2|  120|Caenorhabditis elegans Hypothetical pr...    27   3.4  

>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -1

Query: 325 DDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGSTF 161
           D+ RSN R R+G RQ  S N ++    V P+  +S V  +SD      FRS + F
Sbjct: 173 DEARSNNRHRRGRRQQNSGNQSEAPTAV-PSRVSSGVFIASDY---DEFRSAAEF 223


>U20861-7|AAZ32814.2|  120|Caenorhabditis elegans Hypothetical
           protein C28H8.13 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 304 RSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRS 173
           R+    R+S S +  ++ +D+Q NLNT  VS  +   S  + RS
Sbjct: 31  RAHISDRRSQSRDDFEQSYDLQGNLNTQSVSNGNITTSPYKRRS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,309,584
Number of Sequences: 27780
Number of extensions: 150253
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)