Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31650.1 68417.m04495 transcriptional factor B3 family protei...    27   3.1  
At1g47900.1 68414.m05334 expressed protein                             27   3.1  
At1g25280.1 68414.m03137 F-box family protein / tubby family pro...    27   3.1  
At5g63460.2 68418.m07967 SAP domain-containing protein contains ...    26   7.2  
At3g60300.1 68416.m06740 RWD domain-containing protein contains ...    26   7.2  
At3g17330.1 68416.m02215 expressed protein contains Pfam profile...    26   7.2  
At1g79720.1 68414.m09298 aspartyl protease family protein contai...    26   7.2  
At1g05040.1 68414.m00505 hypothetical protein                          26   9.6  

>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 493

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 265 SAKREFDVQPNLNTSPVSFSSDL 197
           S+++E +++ N+ T P  FSSDL
Sbjct: 107 SSRKEKEIEENIETEPDQFSSDL 129


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 283 QSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGS 167
           Q   +NS K   +V PNLNTS  S S  +       SGS
Sbjct: 450 QLQQNNSQKSSLEVCPNLNTSNPSSSISVSEDGNDDSGS 488


>At1g25280.1 68414.m03137 F-box family protein / tubby family
           protein similar to Tubby protein homolog (SP:O88808)
           [Rattus norvegicus]; contains Pfam PF00646: F-box domain
           and Pfam PF01167: Tub family;
          Length = 445

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 361 TRI*YVCVTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSR 182
           TR  Y+ +++  D+   +  S  G  +S    +    +D QP  NTS  +  +D  S SR
Sbjct: 171 TRTEYI-ISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSR 229

Query: 181 FRS 173
           F S
Sbjct: 230 FHS 232


>At5g63460.2 68418.m07967 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 161

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 331 ALDDFRSNIRSRKGSRQSYSSNSAKREF 248
           ALDD  S  R+   SRQ  SS + +R+F
Sbjct: 100 ALDDRSSAKRAANASRQGSSSRTGERDF 127


>At3g60300.1 68416.m06740 RWD domain-containing protein contains
           weak similarity to RING finger protein 25 (RING finger
           protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
          Length = 366

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 284 AIVLVELCKERVRRAT*PKHQSG 216
           +++LVELC+E V R T   H  G
Sbjct: 97  SLMLVELCEEAVERLTIMNHPEG 119


>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 595

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 316 RSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFR 176
           +S+I +   S  SYS     + +D + + NT+  +++S+   GSR R
Sbjct: 181 KSDIANGVSSIASYSYKPCSKIYDARGDNNTTGSTYTSEQNRGSRTR 227


>At1g79720.1 68414.m09298 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 484

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +2

Query: 119 PKETY*PESSCFADECTTGSESRPAEKIRRE-----TYRTGV*VRLHVELSLCRVRRVRL 283
           PK++Y   +SCF+     G ES   E   RE     T   G  +R  + L   RV+ ++L
Sbjct: 44  PKKSYEASTSCFSRSLGKGRESTTLEMKHRELCSGKTIDLGKKMRRALVLDNIRVQSLQL 103

Query: 284 PGSLPTSNVRSKVV 325
                TS+   + V
Sbjct: 104 KIKAMTSSTTEQSV 117


>At1g05040.1 68414.m00505 hypothetical protein
          Length = 166

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 129 PTNLRAAALRMNVLPDRNRDPLRR 200
           P  +RA   R+N   +R+R PLRR
Sbjct: 47  PLKIRATPRRVNEWRERSRSPLRR 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,756,844
Number of Sequences: 28952
Number of extensions: 139322
Number of successful extensions: 334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)