Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g11
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    31   0.12 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    31   0.16 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    30   0.27 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.48 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.84 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    28   1.1  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   1.9  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   3.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   3.4  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   4.5  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    26   5.9  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   5.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   5.9  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   7.8  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   7.8  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   7.8  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +3

Query: 162 RLEGTSGDTPGGLIIRQKDKPADFQFAKPSLLGLDKLAAAKRKQNRLISFQNEENEDEGT 341
           +L G  G    GL++  +      +  K S LGLD LA  K+K+   +  ++E ++ E  
Sbjct: 86  KLPGNDGSQVAGLVLSNRSGLKGRE-PKKSQLGLDVLAVQKKKEKSQVEGRSELSQVEND 144

Query: 342 NVDNV 356
           +++++
Sbjct: 145 SLESI 149


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 312 QNEENEDEGTNVDNVVKERKYRKHNEETP-TYTGGISEQARERLIERMQKREKQVKEKGV 488
           QN  N D+       +   KY   NEE P +     S Q +E+L +  Q+    + E G 
Sbjct: 377 QNGTNYDDAFAAPEAISIEKYVSINEEDPKSPKKETSYQVQEKLSQFFQEEMIHLLEMGE 436

Query: 489 HNSTQEEKKTQAK 527
             +++E +KT+ K
Sbjct: 437 ACTSRESQKTRKK 449


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 657 HFYFYPYLYCPHPYLASY 604
           HFY YP+ +  HP L+SY
Sbjct: 172 HFYSYPFFFVDHPPLSSY 189


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
 Frame = +3

Query: 282 KRKQNRLISF--QNEENEDEGTNVDNVVKERKYRKHNEETPTYTGGIS------EQARER 437
           KRKQ R +    + E+  D+   +    +E + R+  E         +      E+AR++
Sbjct: 581 KRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKK 640

Query: 438 LIERMQKREKQVKEKGVHNSTQEEKKTQ 521
             E+  KRE++ K++ +    +EEK+ Q
Sbjct: 641 REEQRLKREQEKKQQELERQKREEKQKQ 668


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/90 (20%), Positives = 38/90 (42%)
 Frame = +3

Query: 243 KPSLLGLDKLAAAKRKQNRLISFQNEENEDEGTNVDNVVKERKYRKHNEETPTYTGGISE 422
           +PS   + K   +K+K+    S    E+E   +  ++   E +      E+ +     SE
Sbjct: 65  EPSKKSVKKQKKSKKKEE---SSSESESESSSSESESSSSESESSSSESESSSSESSSSE 121

Query: 423 QARERLIERMQKREKQVKEKGVHNSTQEEK 512
              E +++  +K+E   +      S +EE+
Sbjct: 122 SEEEVIVKTEEKKESSSESSSSSESEEEEE 151


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
 Frame = +3

Query: 144 PEENVHRLEGTSGDTPGGLIIRQKDKPADFQFAKPSLLGLDKLAAAKRKQNRLISFQNEE 323
           P  N+ +    +   P   I   K K  D +  K +    +K + +    +   S +  +
Sbjct: 82  PNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNK-SQSNNISSHEKSSKTTK 140

Query: 324 NEDEGTNVDNVVKERKYRKHNEETPTYTGGISE-QARERLIERMQKREK 467
           N   G    +++ E+K  KHN  +     G+++ +   R IE  Q   K
Sbjct: 141 NVSPGVMTSDLIPEKKSVKHNNSSSNRIEGLADIEKAIRQIEISQNINK 189


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 321 ENEDEGTNVDNVVKERKYRKHNEETPTYTGGISEQARERLIERMQKREKQVKEKG 485
           E+E++ TN +N + E  +    EE+  +     E+  E  IER +  + Q+ ++G
Sbjct: 180 ESEEKATNDNNGLIETNHNSKLEESSEHE---EEEDEESNIERTEDSDHQIPQRG 231


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/43 (27%), Positives = 28/43 (65%)
 Frame = +3

Query: 360  KERKYRKHNEETPTYTGGISEQARERLIERMQKREKQVKEKGV 488
            +E + R+++E+ P+ T    ++  + + +R Q+RE+ V+EK +
Sbjct: 974  REEEERENDEDHPSRT---YKRTTKSITKRQQRREEMVREKEI 1013


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
 Frame = +3

Query: 264 DKLAAAKRKQNRLISFQNEENED---------EGTNVDNVVKERKYRKHNEETPTYTGGI 416
           DK  A +  Q+     Q EENED         E   +DN  ++ + +K      + T  I
Sbjct: 29  DKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDI 88

Query: 417 SEQARERLIERMQKREKQVKEKGVHNSTQEEKKT 518
            + +  +L E +Q   K +KE G    T+ +K++
Sbjct: 89  EKFSDLQLSENIQ---KAIKEMGFETMTEIQKRS 119


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 384 NEETPTYTG-----GISEQARERLIERMQKREKQVKEKGVHNSTQEEKK 515
           N +TPT        G+SE     +IE   +  +   EKG+    ++EKK
Sbjct: 850 NVQTPTAESEIEEDGVSEPISAEVIEDQSRNSEAENEKGLSTEQRDEKK 898


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +3

Query: 168 EGTSGDTPGGLIIRQKDKPAD----FQFAKPSLLGLDKLAAAKRKQNRLISFQNEENEDE 335
           +G S     GL +R+ +   D    F    P   G  K+A    + N     + EEN  +
Sbjct: 520 QGKSSKGSSGLDVREHEGSDDDAEVFVDRSPESFGATKVAHTSLEGNAASHKKVEENMQQ 579

Query: 336 GTNVDNVVKERKYRKHNEETPT 401
                   K++KYR  NEE  T
Sbjct: 580 PVTK----KQKKYRMVNEEAHT 597


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 309 FQNEENEDEGTNVDNVVKERKYRKHNEETPTYTGG 413
           F N+EN    +N+D+V  ++K RK   +    + G
Sbjct: 26  FHNDENRTTTSNLDSVKSKKKRRKTISDASIVSNG 60


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 222 PADFQFAKPSLLG-----LDKLAAAKRKQNRLISFQNEENEDEGTNVD 350
           P+D + ++ S+LG     LD L    +  +  ISF+  + ++EGT  D
Sbjct: 73  PSDAKRSRESVLGSLQAQLDDLKQKSKTLDENISFEKSKRDNEGTEND 120


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 273 AAAKRKQNRLISFQN---EENEDEGTNVDNVVKERKYRKHNEE 392
           +A KRK++ L++ +    ++NE EG +         Y+KH EE
Sbjct: 105 SAKKRKRDLLLARERALLKKNELEGDDATEKFVTSSYKKHREE 147


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 375 RKHNEETPTYTGGISEQARERLIE--RMQKREKQVKEKGVHNSTQEEKKTQA 524
           +K N+ET      + +QAR R ++  R QK E   + K +    + +KK +A
Sbjct: 79  QKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAEIERDKKRRA 130


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
 Frame = +3

Query: 303 ISFQNEENEDEGTNVDN----------VVKERKYRKHNEETPTYTGGISEQARERLIERM 452
           I F+NEE+ D+     N          V +   YR  NE+   Y    S+ A + +  ++
Sbjct: 51  IGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKLRPY----SKYASKNIELKL 106

Query: 453 QKREKQVKEKGVHNSTQEEKK 515
           QK+EK+ + + +     ++KK
Sbjct: 107 QKKEKEEELRNLEEEKAKKKK 127


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 201 IIRQKDKPADFQFAKPSLLGLDKLAAAKRKQ-NRLISFQNEENEDEGTNVDNVVKERK 371
           I+RQ+ +    +  + S    +K    ++K   R+++  N+E E++   +D    ERK
Sbjct: 101 ILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERK 158


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 499 VELCTPFSFTCFSLFC 452
           ++L  PFSF  FS+FC
Sbjct: 399 IDLWRPFSFWLFSIFC 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,493
Number of Sequences: 5004
Number of extensions: 56787
Number of successful extensions: 196
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)