Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.8  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   3.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   8.4  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 598 RCTVDDNYLPRID-V*TPRVEHD*TQH 675
           R +++  YL   D   TP V HD TQH
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQH 85


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 598 RCTVDDNYLPRID-V*TPRVEHD*TQH 675
           R +++  YL   D   TP V HD TQH
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQH 85


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 598 RCTVDDNYLPRID-V*TPRVEHD*TQH 675
           R +++  YL   D   TP V HD TQH
Sbjct: 59  RFSINQPYLNHFDNSVTPMVNHDFTQH 85


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 149 ENNYYIMVHDVILLQVPLPKLEELQKT 229
           +NN Y++++  +L++   PK+  L KT
Sbjct: 25  KNNTYLVLNKYLLVKHSKPKMPLLPKT 51


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 575 NLCC*KREADSSMLGSDRHQNL 510
           N CC + +   S LGSDR   L
Sbjct: 555 NDCCIRYDVSLSGLGSDRRLEL 576


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 320 VVFYSHTTILFFRQNYDVG 264
           V FY H+  L    N+DVG
Sbjct: 246 VPFYGHSWYLQSTSNHDVG 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,915
Number of Sequences: 336
Number of extensions: 3903
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)