Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   4.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   4.0  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   4.0  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   5.3  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   7.0  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.3  

>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 VVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAVSGKLQGAPLTITTCPVLMF 640
           V+ +   +Q +++  D    P++R   + FN  N +++  L   P  IT  PV+ +
Sbjct: 73  VLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRITVPPVIFY 128


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 444 SPRSKCLFCNLIGKGAIFQLLSLRSGEFLKSIKGSFFISTARRFLF 307
           SP  KCLF NL+     F L   +     K +  S     ARRFL+
Sbjct: 456 SPAQKCLFSNLLTATRKFCLERQKDDVTFKVLLQSSKAPIARRFLY 501


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 245  VLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNSPER 376
            + EF+  LHR F++ I   Y  +  + V    +P I   N P R
Sbjct: 1012 ITEFVKELHRCFEDTISFFYNKKNPKVVTGVFNPRI-LANRPYR 1054


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 387 LLSLRSGEFLKSIKGSFFISTARRFLFSYNNSIFSSKL 274
           LL + +G F  S+ G F+I   R   F Y++++ + +L
Sbjct: 627 LLFIFAGGFAMSVAGVFYILYRRNQAFQYSSTVTNKQL 664


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 500 GIQVDFDDGHCPTWRNQLLAFNNINL 577
           G Q  F+    P WR  L+ FN I++
Sbjct: 184 GFQFVFESAIVPNWRKGLITFNKISV 209


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 658 VPRAGSKHQYGAGSYR--QRCTL*FTAHSQIYVVESEKLIPPCWAVTVIKIYL 506
           VP  G    Y  GS+   Q  TL  T HS    +ES++ IPP       +I L
Sbjct: 170 VPNPGCGLVYDLGSHLIDQAITLFGTPHSVTAKLESQRQIPPLEVEDCFRIVL 222


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 542 RNQLLAFNNINLAVSGKLQGAPLTI 616
           RN L  F+N+   VSG L+  PLT+
Sbjct: 370 RNDLCKFSNLFSGVSGHLKIQPLTL 394


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 369 GEFLKSIKGSFFISTARRFLFSYNNSIFSSKLRCRAAINSRTSL--EKIVFCNS-SSFGS 199
           G  ++ + G   +   R FL+++NN+      R + ++ +R S+    + F N+  +FG+
Sbjct: 303 GYIIRILSGEQTVKYDREFLYAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGT 362

Query: 198 GT 193
            +
Sbjct: 363 SS 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,309
Number of Sequences: 5004
Number of extensions: 67513
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)