Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029...    88   6e-18
04_04_1553 - 34363848-34366058,34369087-34370451                       29   3.2  
04_04_1550 - 34332948-34335986                                         29   3.2  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     29   4.2  
04_03_0689 + 18746735-18748296,18748401-18748485                       29   4.2  
02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590     29   5.5  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    28   7.3  

>04_04_0310 -
           24301274-24301945,24302035-24302365,24302629-24302954,
           24303039-24303413
          Length = 567

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 12/197 (6%)
 Frame = +2

Query: 230 IFSSEVLEFIAALHRNFDEKIELLYENRK--RRAVEIKNDPFIDFKNSPERRDKSWKIAP 403
           I + + L F+A L R F   +    E R+  +R  +    P  D    P R    W  AP
Sbjct: 32  ILTRDSLAFVAGLQREFRGAVRYAMERRREAQRRYDAGELPRFDPATRPVREAGGWACAP 91

Query: 404 LPIRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAV 583
           +P  + +R +++    A      + ALN   +    DF+D   PTW N +    N+  AV
Sbjct: 92  VPPAIADRTVEITG-PAEPRKMVINALNSGAKVFMADFEDALSPTWENLMRGQVNLRDAV 150

Query: 584 SGKL------QGAPLTITTCPVLMF-RPRAWNMIEHNILIDGKEAIGPLVDFAVLMYHN- 739
           +G +      +G    +   P  +F RPR W++ E ++L+DG+ AIG LVDF +  +H+ 
Sbjct: 151 AGTITYRDAARGREYRLGDRPATLFVRPRGWHLPEAHVLVDGEPAIGCLVDFGLYFFHSH 210

Query: 740 --ARKLYEANSGPYFLL 784
              R    A+ GP+F L
Sbjct: 211 AAFRSGQGADFGPFFYL 227


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 521 DGHCPTWRNQLLAFNNINLAVSGKLQGA-PLTITTCPVLMFRPRAWNMIEHNILID 685
           +G+ P    +L +  ++NLA S +L G  PL++++CP+L       N +   I ID
Sbjct: 724 NGNIPDVFGKLRSLESLNLA-SNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITID 778


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 521 DGHCPTWRNQLLAFNNINLAVSGKLQGA-PLTITTCPVLMFRPRAWNMIEHNILID 685
           +G+ P    +L +  ++NLA S +L G  PL++++CP+L       N +   I ID
Sbjct: 256 NGNIPDVFGKLRSLESLNLA-SNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITID 310


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 572 NLAVSGKLQGAPLTITTCPVLMFRPRAWNMIEHNILIDGKEAIGPL 709
           +LA   + QG+ +T + C V M  PRA  ++EH   +  +  + PL
Sbjct: 301 SLAKKPRSQGSSITCSLCKVTMTSPRA--LVEHRASLLHRSNLAPL 344


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +2

Query: 182 ILLQVPLPKLEELQKTIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFK 361
           +++ VP P  +E+   + ++E  + I A        I+ ++E+R+RRA       F+ F 
Sbjct: 426 VIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAF------FLGFS 479

Query: 362 NSP 370
            SP
Sbjct: 480 QSP 482


>02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590
          Length = 331

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 431 LDLGDVSASNTAHFVVALNEDVQGIQVDFDDGH 529
           L LG    ++ + F V +  DVQG+QV F DGH
Sbjct: 210 LTLGVAPHTDMSTFTVLVPNDVQGLQV-FKDGH 241


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 39   YYFLRTRTIFRF-ECFNTTFNQVQLCRV 119
            YY++  RTI  + EC   T   ++LCR+
Sbjct: 994  YYYVSHRTISTYNECLKPTMGDIELCRL 1021


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,892
Number of Sequences: 37544
Number of extensions: 400327
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)