Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56413| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   9e-22
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               83   3e-16
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)                   31   1.1  
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          29   4.3  
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 29   4.3  
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)           29   4.3  
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)                   29   5.6  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            28   7.5  
SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)                    28   7.5  
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   9.9  

>SB_56413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score =  101 bits (241), Expect = 9e-22
 Identities = 51/125 (40%), Positives = 76/125 (60%)
 Frame = +2

Query: 227 TIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNSPERRDKSWKIAPL 406
           T+ + + + F+  L  +FDE+++ L   R+   V+ +     DF+   E R+K W++  L
Sbjct: 59  TLLTPQSVAFLVQLVNHFDEQVDELQRQRRLNKVQFEQC-LPDFQIK-ESRNK-WQVKDL 115

Query: 407 PIRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAVS 586
           P RLQ+R +DLGD++ SNT  F  ALN    GIQ D DDG+CPTW+NQL A  N+   V 
Sbjct: 116 PARLQDRRVDLGDITPSNTLLFKRALNSSASGIQADLDDGNCPTWKNQLQALYNVYQFVH 175

Query: 587 GKLQG 601
           G++ G
Sbjct: 176 GQMSG 180


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
 Frame = +2

Query: 230 IFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNSPERRDKSWKIAPLP 409
           I S + LEF+A LHR F+   + L + R +   EI     I +  S   +D  WK++ +P
Sbjct: 20  ILSYQALEFLADLHRRFNYTRKQLLKKRMQIQSEINAGKKITYPVSNHSKD--WKVSAVP 77

Query: 410 IRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAVSG 589
             LQ RH+++     ++    + A+N        DF+D   PTW+N +    N+  A   
Sbjct: 78  HDLQMRHVEI--TGPTDCKMVINAMNSGADMYMADFEDSLSPTWKNIVEGQVNLLEANKK 135

Query: 590 KLQ-----GAPLTI---TTCPVLMFRPRAWNMIEHNILIDGKEAIGPLVDFAVLMYHNAR 745
            +Q     G+   +   T C  L+ R R W++ E +I+ D +   G L DF +  +HN  
Sbjct: 136 TIQFVNPDGSVRELKDKTAC--LLVRTRGWHLDERHIICDNEPMAGALGDFGLYFFHNLD 193

Query: 746 KLYEANSGPYFLL 784
               A S PYF L
Sbjct: 194 VRLAAKSAPYFYL 206


>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
          Length = 724

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +2

Query: 215 ELQKTIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNSPERRDKSWK 394
           E  + +F +EV E    +    ++    + EN   R   + +    D ++ PE+R +S +
Sbjct: 343 EQGELLFQAEVEEQDPQVADEMEDTAPPVVENHAARPPSLASSDVSDVQSEPEQRTRSGR 402

Query: 395 IAPLPIRLQNRHLDL 439
           ++  P RLQ  ++ L
Sbjct: 403 VSKKPQRLQISNVKL 417


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 209 LEELQKTIFSSEVLEFIAALHRNFDEKIELL--YENRKRRAVEIKNDPFIDFKNSPERRD 382
           LEEL +  + +++ E  A L ++ +E  + L  YE  K++  E  +   +D KN  ERR 
Sbjct: 55  LEELTE-YYENKLQEKTAQLDQSQEESRQQLREYEETKKQIEEDADREILDIKNKYERRL 113

Query: 383 KSWKIAPLPIR 415
           +  K A L ++
Sbjct: 114 REEKEANLRLK 124


>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 78  CFNTTFNQVQLCRVSCCADYLLNKKIITTLWCTMLFYFKYRFQNSKNY-----RRRFFLV 242
           CF      +Q+C++S  +D++L  KI       +  +F  R  N K Y       RF++ 
Sbjct: 185 CFIICHCLLQICKLSTSSDHVLPVKITEIYSMFLKIFFHMRNHNRKAYGCSKCDLRFYMY 244

Query: 243 KSSNLLQP 266
           K    L+P
Sbjct: 245 KPFEDLEP 252


>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
          Length = 965

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -1

Query: 402 GAIFQLLSLRSG--EFLKSIKGSFFISTARRFLFSYNNSIFSSKLRCRAAIN---SRTSL 238
           G +F  LS R+   E L+S+  S FIS  RRF FS   +  +S LRC    N   + T L
Sbjct: 580 GLVFTCLSSRAIHIELLESMDASAFISALRRF-FSLRGA--ASLLRCDRGTNFVGANTEL 636

Query: 237 EK 232
           E+
Sbjct: 637 EE 638


>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
          Length = 574

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 533 PTWRNQLLAFNNINLAVSGKLQGAPLTITTCPVL-MFRPR--AWNMIE 667
           P WR+Q++  NN  LA+ G L+    T    P L  ++PR  +W  I+
Sbjct: 315 PRWRSQMVLLNNSVLAIGG-LKEVSTTNPEIPFLETYQPRKDSWQAIQ 361


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 402  GAIFQLLSLRSG--EFLKSIKGSFFISTARRFLFSYNNSIFSSKLRCRAAIN 253
            G +F  LS R+   E L+S+  S FIS  RRF FS   +  +S LRC    N
Sbjct: 1307 GLVFTCLSSRAIHIELLESMDASAFISALRRF-FSLRGA--ASLLRCDRGTN 1355


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 521 DGHCPTWRNQLLAFNNINLAVSGKLQGAPLTITTCPVLMF 640
           +GHC    N L    N +     KLQGA L + T P L++
Sbjct: 256 NGHCSQKCNDLTLGYNCSCFSGYKLQGARLCVGTLPSLVY 295


>SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)
          Length = 618

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 572 LCC*KREADSSMLGSDRHQNLLGSLEHPH 486
           L C K E D     +D+HQ+LL S  HPH
Sbjct: 499 LDCGKIETDLYFKPTDKHQHLLFSSCHPH 527


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 272  RNFDEKIELLYENRKRRAVE-IKNDPFIDFKNSPERRDKSWKIAPLPIRLQNRHLDLGDV 448
            RN+   IEL  +N++  A + + ND +  F  SP+  +  + +     ++ N H  L D 
Sbjct: 1165 RNYS--IELSRDNKELEASQKVNNDHYALFDTSPKINNDHYALFDTSPKINNDHYALFDT 1222

Query: 449  SAS-NTAHFVV 478
            S   N  H+ +
Sbjct: 1223 SPKVNNDHYAL 1233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,588,367
Number of Sequences: 59808
Number of extensions: 488505
Number of successful extensions: 1191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)