Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.80 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   4.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  ENHTDIIFFEHERYSDLNVSIQLSIKCSCVAFLAVQITY 141
           E + DI+F    R   L  ++ L I C  ++FL+V + Y
Sbjct: 221 EPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFY 259


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 413 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 514
           R ++R  D  D S  SNT+  V+  N+  +GIQ++
Sbjct: 79  RSKSRSPDSRDRSNTSNTSKTVILSNKGPEGIQIN 113


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 413 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 514
           R ++R  D  D S ASNT+  V+  ++  +GIQ++
Sbjct: 79  RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQIN 113


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 413 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 514
           R ++R  D  D S  SNT+  ++  N+  +GIQ++
Sbjct: 79  RSKSRSPDSRDRSNTSNTSKTIILSNKGPEGIQIN 113


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 413 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 514
           R ++R  D  D S ASNT+  V+  ++  +GIQ++
Sbjct: 79  RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQIN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,793
Number of Sequences: 438
Number of extensions: 5189
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)