Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g07
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03860.1 68418.m00358 malate synthase, putative strong simila...    81   1e-15
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    29   3.5  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    28   6.1  
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    28   8.1  

>At5g03860.1 68418.m00358 malate synthase, putative strong
           similarity to glyoxysomal malate synthase from Brassica
           napus [SP|P13244]
          Length = 562

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 11/204 (5%)
 Frame = +2

Query: 206 KLEELQKTIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNSPER-RD 382
           + +++   I + E L F+A L R F   ++   E R+       +     F  S +  RD
Sbjct: 26  RYDQIFAKILTREALSFVAELQREFRGHVKYAMECRREARRRYNSGAVPGFDPSTKFIRD 85

Query: 383 KSWKIAPLPIRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAF 562
             W  A +P  + +R +++           + ALN   +    DF+D   P+W N +   
Sbjct: 86  GDWSCASVPPAVADRRVEI--TGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGH 143

Query: 563 NNINLAVSG------KLQGAPLTITTCPVLMF-RPRAWNMIEHNILIDGKEAIGPLVDFA 721
            N+  AV G      K +     +      +F RPR W++ E +ILIDG+ A G LVDF 
Sbjct: 144 VNLKDAVDGSITFHDKSRNRVYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFG 203

Query: 722 VLMYHNARKLYEANS---GPYFLL 784
           +  +HN  K  +      GP+F L
Sbjct: 204 LYFFHNYAKFRQTQGSGFGPFFYL 227


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
 Frame = +2

Query: 188 LQVPLPKLEELQKTIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFKNS 367
           + +    L  L  +IFSS  L+   A H NF  KI    ++R   ++ + +  F  F   
Sbjct: 466 IDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRP--SLSVLDLSFNHFSGG 523

Query: 368 -PERRDKSWKIAPLPIRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWR 544
            PER     K+  L ++      ++    A      V+ L+ +     +  D G  PT  
Sbjct: 524 IPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLE 583

Query: 545 NQLLAFNNIN 574
              ++FN ++
Sbjct: 584 MLNVSFNKLD 593


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 527 HCPTWRNQLLAFNNINLAVSGKLQGAPLTITTCPVLMFRP 646
           HC TW  Q   ++N N   + +   AP +  + PV   RP
Sbjct: 43  HCTTWNQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARP 82


>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 182 ILLQVPLPKLEELQKTIFSSEVLEFIAALHRNFDEKIELLYENRKRRAVEIKNDPFIDFK 361
           +L+ VP P   +L   + ++E  + I A        I  ++E+R+RRA       F+ F 
Sbjct: 416 VLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAF------FLGFS 469

Query: 362 NSP 370
            SP
Sbjct: 470 QSP 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,621
Number of Sequences: 28952
Number of extensions: 339473
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)