BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10g05 (694 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 83 3e-16 05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 79 3e-15 01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 77 1e-14 03_05_0830 + 28034179-28035492 29 3.5 08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 29 4.6 01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 6.1 >01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553, 9657922-9658023,9659895-9660000,9660145-9660165 Length = 136 Score = 82.6 bits (195), Expect = 3e-16 Identities = 39/56 (69%), Positives = 46/56 (82%) Frame = +2 Query: 74 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241 MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLR Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56 Score = 78.2 bits (184), Expect = 6e-15 Identities = 32/43 (74%), Positives = 38/43 (88%) Frame = +1 Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693 RKSEIEYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I D Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIID 98 >05_05_0300 + 23932947-23933196,23934022-23934123,23934249-23934317, 23934406-23934446 Length = 153 Score = 79.0 bits (186), Expect = 3e-15 Identities = 32/43 (74%), Positives = 37/43 (86%) Frame = +1 Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693 RKSEIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I D Sbjct: 97 RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIID 139 Score = 76.2 bits (179), Expect = 2e-14 Identities = 35/55 (63%), Positives = 42/55 (76%) Frame = +2 Query: 77 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241 V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLR Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97 >01_06_1103 - 34543915-34543955,34544069-34544137,34544294-34544395, 34545603-34545708,34545998-34546079,34546850-34547142 Length = 230 Score = 77.4 bits (182), Expect = 1e-14 Identities = 30/43 (69%), Positives = 38/43 (88%) Frame = +1 Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693 RKSEIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ D Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVD 216 Score = 72.9 bits (171), Expect = 2e-13 Identities = 34/49 (69%), Positives = 37/49 (75%) Frame = +2 Query: 95 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241 KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLR Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174 >03_05_0830 + 28034179-28035492 Length = 437 Score = 29.1 bits (62), Expect = 3.5 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 143 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 226 +GKY G TLKTL G + +I+ +N Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326 >08_02_0881 - 22216657-22216780,22216918-22217056,22217120-22217192, 22218260-22218357,22218516-22218542,22218625-22218715, 22218819-22218900,22219983-22220098 Length = 249 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 523 EPME*SLNSILHFGRKSEIEYYALLAKTGVHHYSGNNI 636 E M+ L +LH S+++YY G+H+ NN+ Sbjct: 119 EYMDHDLKKVLHHSTPSQVKYYMEQLLKGLHYCHVNNV 156 >01_05_0712 - 24531654-24531874,24532438-24532538,24532621-24532716, 24532951-24533048,24533827-24533883,24534764-24534895, 24535042-24535155,24535227-24535359,24535448-24535678, 24535761-24535843,24536009-24536137,24536504-24536599, 24536719-24536773,24537316-24537386,24537472-24537525, 24537691-24537768,24537985-24538117,24539381-24539496, 24539580-24539651,24540113-24540218,24540657-24540772, 24541170-24541319,24541410-24541492,24541591-24541669, 24542645-24542695 Length = 884 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 461 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 556 I++ I +H L T+ D +V N W + YF Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,008,043 Number of Sequences: 37544 Number of extensions: 336539 Number of successful extensions: 646 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 646 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -