Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g05
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 84 7e-17
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 82 3e-16
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 79 2e-15
At1g80410.1 68414.m09413 acetyltransferase-related low similarit... 29 3.9
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 28 5.1
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 6.8
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 27 8.9
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 84.2 bits (199), Expect = 7e-17
Identities = 40/56 (71%), Positives = 45/56 (80%)
Frame = +2
Query: 74 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241
MVAAKK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +1
Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693
R+SEIEYYA+LAK GVHHY+ NN++LGTACGKY+RV L+I D
Sbjct: 56 RRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVD 98
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = +2
Query: 74 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241
MVA KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +1
Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693
R+SEIEYYA+LAK GVH Y+GNN++LGTACGKY+RV L+I D
Sbjct: 56 RRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVD 98
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/56 (67%), Positives = 43/56 (76%)
Frame = +2
Query: 74 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 241
MV KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56
Score = 79.0 bits (186), Expect = 3e-15
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +1
Query: 565 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITD 693
R+SEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV L+I D
Sbjct: 56 RRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVD 98
>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
to acetyltransferase Tubedown-1 [Mus musculus]
GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
(Saccharomyces cerevisiae); contains Pfam profile
PF00515 TPR Domain
Length = 897
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 473 IKLHSFLNTVLLDHNVGNLWSSL*TRYF 556
I +H+ L+TVLLD + W S YF
Sbjct: 814 IAVHTLLDTVLLDSQAASRWKSRCAEYF 841
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 104 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 235
I + +++ KS Y GY Q+ +T R + KL+ I K PP
Sbjct: 7 IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 143 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 226
+GKY G + TLK L G + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 143 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 226
+GKY G + TLK L G + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,544
Number of Sequences: 28952
Number of extensions: 290255
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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