Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g04
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 50 4e-07
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 44 2e-05
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 37 0.002
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 33 0.029
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 33 0.029
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 33 0.051
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 32 0.089
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 31 0.12
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.20
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.20
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.27
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 30 0.36
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.47
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 29 0.47
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.47
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.83
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.5
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 27 2.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.5
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 27 2.5
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.3
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.3
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 4.4
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 4.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 4.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 4.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 5.8
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 5.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 5.8
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 25 7.7
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 7.7
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 7.7
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +3
Query: 333 QKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN--TLL 506
Q I +Q QNR LK+E + + ++KAL E N+SL++A +++ + E +N T +
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEM 373
Query: 507 KKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 620
K+ + KE L HY+ + +SR LR++
Sbjct: 374 KEARQKLNNKEALISHYDDDFRAKELKISRLSESLREK 411
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/100 (28%), Positives = 49/100 (49%)
Frame = +3
Query: 300 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQE 479
L S ++ + I L+ +N LK L+ R AL EN+SLR+A+ +Q +++
Sbjct: 79 LQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIA 138
Query: 480 EEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRK 599
E +S +I+AL+ E L + + L++ RK
Sbjct: 139 SEQLS-IAKDQIEALQNENSHLGEQVQSAHQALSDIEERK 177
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 372 LKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ-EEEYISNTLLKKIQALKKEKETLA 548
LK EL + + ++ L +E L+ ++++K+E E E N KI+ L+ + LA
Sbjct: 1322 LKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ--SKIEQLELKNTKLA 1379
Query: 549 HHYEREEECLTNDLSRKLNQLRQE 620
+ + E + N K NQ+RQ+
Sbjct: 1380 AAWRTKYEQVVNKSLEKHNQIRQQ 1403
Score = 30.7 bits (66), Expect = 0.20
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = +3
Query: 324 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 503
+QLQ + ++ +K E D Y+L+ E+N L+ S+ Q ++E S++L
Sbjct: 943 EQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNH-LKITSLE-QRIVILQDEIASSSL 1000
Query: 504 LKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQ 617
+ + + K+ ET E + L N+LS N +Q
Sbjct: 1001 --RCENITKDSETRVALLLEENKHLNNELSSHRNAEKQ 1036
Score = 29.9 bits (64), Expect = 0.36
Identities = 26/108 (24%), Positives = 51/108 (47%)
Frame = +3
Query: 306 PSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEE 485
PSTVS ++ E L R L +D + +EE +RQ S + ++ + E
Sbjct: 1440 PSTVSLEEFNSTKEELSSTQRKLSEIMDI----LNTTKEELEKVRQNSNKSEGTSK-DTE 1494
Query: 486 YISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQEKCR 629
+ +++ + +++E L +E + N+L RK NQ+ Q++ +
Sbjct: 1495 IPNEEEMERKKVMQQEVLRLRSRIAKELQ--KNELLRKQNQVLQDQVK 1540
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQA-SVSIQAKAEQEE 482
+L+ RI Q+N +L+ + + +VKALQE S +A S S+ A + E
Sbjct: 1513 RLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKDLE 1565
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = +3
Query: 324 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 503
+ L ++ E+ + Q + ++E +T +LR+KA E+ + +S + + +EE ++ L
Sbjct: 44 ESLSRKSEAAESQ--LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKL 101
Query: 504 LKKIQALKKEKETLAHHYEREEECL---TNDLSRKLNQL 611
L++ ++ + A H+ER + L +D+ +KL ++
Sbjct: 102 LRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEM 140
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.029
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 315 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASV--SIQAKAEQEEEY 488
+ + Q +KRI L+++ L+ +++ + + R + S SIQ E+
Sbjct: 106 LQKSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVREDE 165
Query: 489 ISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQL 611
++ ++ L ++ E A ++ERE E N +S+ QL
Sbjct: 166 KKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQL 206
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/75 (21%), Positives = 40/75 (53%)
Frame = +3
Query: 321 RDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNT 500
RD L+ ++++L+ N L++ + ++++L+ +NR + + ++ A + +
Sbjct: 437 RDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDKALAE 496
Query: 501 LLKKIQALKKEKETL 545
++Q + KE ETL
Sbjct: 497 TNIRLQEVTKELETL 511
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 330 LQKRIESL--QQQNRVLK--VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYIS 494
L+KR+ES+ +Q +K VEL + ++ + SL Q S K E++ +Y+S
Sbjct: 175 LEKRLESMAPEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDKNFKLEEKVDYLS 233
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 32.7 bits (71), Expect = 0.051
Identities = 18/87 (20%), Positives = 47/87 (54%)
Frame = +3
Query: 324 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 503
++ R+E + ++ L+ ++ + + L E +S+ + + Q + + +S+TL
Sbjct: 891 ERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSD-LSSTL 949
Query: 504 LKKIQALKKEKETLAHHYEREEECLTN 584
KK+ ++KK+++T++ Y+ E+ N
Sbjct: 950 EKKLSSIKKDEQTISSKYKELEKDYLN 976
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 31.9 bits (69), Expect = 0.089
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 318 SRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN 497
S+++L + L++ N V+ EL++ KL++ EE S++ + + +++ E N
Sbjct: 483 SQEELLQLNAKLEKANIVID-ELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYEN 541
Query: 498 TLLKKIQALK-KEKETLAHHYER 563
+ +I + KE ETL YE+
Sbjct: 542 EVNSEITSRTLKEFETLKTQYEK 564
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +3
Query: 315 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ-----E 479
++ + L+++ + L+++N LKVE + + L+EE L++ ++K E+ +
Sbjct: 98 LASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKKKCNVYKSKFEESSLRCK 157
Query: 480 EEYISNTLLK-KIQALKKEKET 542
Y SNT LK ++ +K+ ET
Sbjct: 158 SLYSSNTKLKDSMETMKRRMET 179
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 330 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 509
L +R L + N ++ R K+ ++N+ + + S A E++ + N+L K
Sbjct: 254 LNERATKLSEANENFNNRFKEFEEREKSAIKQNKE-QSSEGSKTANQTHEQKELINSLEK 312
Query: 510 KIQALKKEKETLAHHYEREEECLTN--DLSRKLNQL 611
K+ + EK+ L ER + + + R+L +L
Sbjct: 313 KVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKEL 348
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +3
Query: 327 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 506
+ ++ +SLQ+ ELD + + E + +R + + K+ Q+E +S + L
Sbjct: 975 EFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSES-L 1033
Query: 507 KKIQALKKEKETL 545
K+++ L++E TL
Sbjct: 1034 KRVKKLERENSTL 1046
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 30.3 bits (65), Expect = 0.27
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 378 VELDTYKLRVKALQEENRSLRQASVSIQAK-AEQEEEYISNTLLKKIQALKKEKETLAHH 554
V+++ + R+KALQ + LR+ ++++ K A+ + E ++ + K ETL
Sbjct: 615 VQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEGITDSWIVKHHETL--- 671
Query: 555 YEREEECLTNDLSRKLNQLRQE 620
YE E+E + R+ +L E
Sbjct: 672 YELEKEKIKKKFDRENEKLAAE 693
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 29.9 bits (64), Expect = 0.36
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 315 VSRDQLQKRIESLQQQNRVL---KVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEE 485
+ R+ +K E L Q + K ELD ++R++ALQ + L+ I+ E+E
Sbjct: 51 ILREANRKSYEQLVQAKTITAEHKSELDNARIRLQALQYKKLHLK---TIIKNYEEKEHI 107
Query: 486 YISNTLLKKIQALKKEKE-TLAHHYEREEECLTNDLS--RKLNQLRQE 620
Y + L+ K + LK+ E ++ ++ L ++L ++L+ L+QE
Sbjct: 108 YTALPLVSKEEFLKEHPEFKSSNDHDLMLAILEDELKERQRLSTLKQE 155
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.5 bits (63), Expect = 0.47
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 336 KRIESL-QQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKK 512
KR++ L +++ R+ K E K K LQ+E + A A+Q I+NT
Sbjct: 723 KRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQA---IANT--GP 777
Query: 513 IQALKKEKETLAHHYEREEE 572
+ E ET HYE EEE
Sbjct: 778 VAPPYFEHETEPSHYEEEEE 797
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 29.5 bits (63), Expect = 0.47
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +3
Query: 465 KAEQEEEYISNT----LLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQ 617
+ + E +I+N+ L KK+Q E TL+H E+E L N L RK+N+L++
Sbjct: 19 RENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNEL-NKLIRKINELQE 72
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.47
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Frame = +3
Query: 330 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL-- 503
++K ++ L + VEL+ + L EEN ++ ++++ K++++ + +N +
Sbjct: 1079 IEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDD 1138
Query: 504 LKK----IQALKKEKETLAHHYER---EEECLTNDLSRKLNQLRQEK 623
LK+ ++ L EK L E+ E L + S N+L K
Sbjct: 1139 LKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMK 1185
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/96 (20%), Positives = 48/96 (50%)
Frame = +3
Query: 333 QKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKK 512
+ ++ S +Q+N+ LK +D Y+ L +++ ++Q VS Q + + + L +
Sbjct: 391 ESKLSSFEQENKSLKGSIDEYQ---NNLSSKDKMVKQ--VSSQLEEARSSLAHATGKLAE 445
Query: 513 IQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 620
I + + + +E+ E+ L L+ N+L+++
Sbjct: 446 INSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEK 481
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +3
Query: 327 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 506
QLQ + +Q+ L E + + ++ L+E N+SL + + + E+ + + L
Sbjct: 641 QLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDS-LEKNIQTLKEDLR 699
Query: 507 KKIQALKKEK 536
K +AL+ K
Sbjct: 700 KSEEALRFSK 709
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 357 QQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEK 536
++ ++ K ++R K + R ++ Q K +E+E I+ +K+++ L+KE+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKRE-KERQQREQEKKLREQEKIAAKKMKELEKLEKER 134
Query: 537 ETLAHHYEREEE 572
L R+EE
Sbjct: 135 IRLQEQQRRKEE 146
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +3
Query: 381 ELDTYKLRVKALQEENRSLRQASVSIQA----KAEQEEEYISNTLLKKIQALKKEKETLA 548
E D Y ++ E NR R + S +A K +++ K+ + LK+EKE
Sbjct: 49 EADEYVCKLS--YEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQ 106
Query: 549 HHYE---REEECLTNDLSRKLNQLRQEKCR 629
E RE+E + ++L +L +E+ R
Sbjct: 107 REQEKKLREQEKIAAKKMKELEKLEKERIR 136
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Frame = +3
Query: 309 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEY 488
ST+ D+ + I SL ++ L K R L+ L +A K ++ E
Sbjct: 106 STLEHDKSKPVISSLIDED----ANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTED 161
Query: 489 ISNT-----LLKKIQALKKEKETLAHHYEREEECLTNDL 590
+ T L K++ + + + E HYE+ +CL L
Sbjct: 162 LIRTDSHFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQL 200
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.5
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +3
Query: 396 KLRVKALQEENRSLRQAS-VSIQAKAEQEEEYISNTLLKKI--QALKKEKETLAHHYER- 563
K ++K +EE R R+A ++ QA + E KK Q LK+E+E ER
Sbjct: 601 KKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQ 660
Query: 564 --EEECLTNDLSRKLNQLRQEKCR 629
EE+ + +KL + +QE R
Sbjct: 661 KREEKQKQKEREKKLKKQQQEADR 684
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 408 KALQEENRSLRQASVSIQAKAEQEE--EYISNTLLK--KIQALKKEKET-LAHHYEREEE 572
+ + EENR + ++ + QEE I + LL+ K +A KK+ E LA +R +
Sbjct: 78 QGIDEENRVRLERMNDLEIEGAQEEIRATIRDDLLEMLKKRAFKKKAERELAQRKDRSSQ 137
Query: 573 CLTNDLSRK 599
T DLS++
Sbjct: 138 VNTPDLSQR 146
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/91 (23%), Positives = 43/91 (47%)
Frame = +3
Query: 324 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 503
D+LQKR+++L+++N K + D+ L++ L+ + + ++ EE
Sbjct: 623 DELQKRLQTLEEENN--KAKEDSTSKTSNLLEQ----LKMTEAEVDSLRKENEENKQVIA 676
Query: 504 LKKIQALKKEKETLAHHYEREEECLTNDLSR 596
LK+ + +K L + E L + LS+
Sbjct: 677 LKESELVKSNDNKLL--LNEQIESLNDQLSQ 705
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +3
Query: 297 MLPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ 476
+L S Q Q+ + S Q ++L E + +EN S A++ + +
Sbjct: 5 LLRDSVKKASQFQRSLHSDPNQAKILLEERRKLLEEANSSADENDSHSMATIKSHFERLK 64
Query: 477 EEEYISNTLLKKIQA 521
+E + N +LKK A
Sbjct: 65 RDEQLLNGVLKKYDA 79
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 393 KYLTPLSKLYFVAVEIQFFSVVDHEKQYSEEALRHRQVNWSHFRT 259
K LT K F A E + SVV+ E +Y E ++ ++ +W F +
Sbjct: 178 KSLTSSCKFLFEAKE-RLTSVVETEHEYYTELVKVKEASWPLFNS 221
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 348 SLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVS-IQAKAEQEEEYISN-TLLKKIQA 521
SLQ++N L+ ELD ++ Q RS +Q ++ ++A+ E ++ + T +KK
Sbjct: 47 SLQEKNAELRAELD----NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102
Query: 522 LKKEKETLAH 551
K E E H
Sbjct: 103 FKSEVELDKH 112
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 399 LRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECL 578
LRV + ++R ++SVS + EQ + Y N L+++ L+ E L+ E++ L
Sbjct: 467 LRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRIL 526
Query: 579 TNDLSRKL 602
++L
Sbjct: 527 VAAAEKEL 534
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 309 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSL 437
+T+ DQL++++ L+++ R+LK T+++ +L N SL
Sbjct: 118 TTLENDQLRQKVRQLEEELRILKDGSFTFEM---SLPHRNPSL 157
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 303 PPSTVSRDQLQKRIESLQQQN--RVLKVELDTYKL-RVKALQEENRSLRQASVSIQAKAE 473
P S + D ++ + L + ++ + DT+ L +K L+EE LR S+ +
Sbjct: 336 PVSLDAVDGIELSLRDLNDEESLQLKRARYDTFGLGNIKDLEEEEEKLRSVEGSLNEELS 395
Query: 474 QEEE 485
+EE+
Sbjct: 396 EEEK 399
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 438 RQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYER 563
R+ + + ++ EQEEEY S + IQ K +K L +R
Sbjct: 1805 RKKKLVLPSQVEQEEEYWSGLMEVTIQIWKHDKGFLEPELDR 1846
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/70 (21%), Positives = 39/70 (55%)
Frame = +3
Query: 402 RVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLT 581
+++ L +EN +L+ ++ + +EEY++ L++K++ ++K+ + + E+E
Sbjct: 95 KIEKLLKENGTLKNEEKCLRMQIVAQEEYVA-PLIQKLEIIEKKLDK-SFRKNMEDELRI 152
Query: 582 NDLSRKLNQL 611
L+ + N L
Sbjct: 153 TRLASENNVL 162
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.4
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 324 DQLQKRIESLQQQ-NRVLK---VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYI 491
+Q + +E LQ+ N V++ ++ K + K R + S Q E ++
Sbjct: 420 EQTCQEVERLQRSYNHVMEEANLQHPLVKEQFKRFAHMQREIVAMSEQYQKSLEDCQK-- 477
Query: 492 SNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 620
+ + ++++ L K+K T HYE+E T DL+R++ L E
Sbjct: 478 AKSRYEQLETLFKDKCTENKHYEQE----TKDLARQVQVLLHE 516
Score = 25.4 bits (53), Expect = 7.7
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Frame = +3
Query: 300 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQ-EENRSLRQASVSIQAKAEQ 476
L + +QK IESL+ N L+ + ++ Q E+ +S ++ + A ++
Sbjct: 1446 LTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSEKERTEKELADSKN 1505
Query: 477 EEEYISNTLLK---KIQALKKEKETLAHHYEREEECL---TNDLSRKLNQLRQ 617
E E++ + + K + EKE H ++E L +LS +L LR+
Sbjct: 1506 ELEHLQSEAVDADGKTEISNLEKE--IHELRSDKEGLVQQVQNLSAELAALRE 1556
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 5.8
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = +3
Query: 330 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 509
LQ++I LK ++ T+K + +AL + LRQ + + +K +Q + S+
Sbjct: 456 LQEQIHQNDDLIESLKNQILTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEA 515
Query: 510 KIQALKKEKETLAHHYEREEECLTNDLSR 596
+ K E+E + E + L D +R
Sbjct: 516 IDKKEKMEREMKNKNLELADMILERDRAR 544
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 483 EYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 620
EY ++ +KK++ E E YE E+ + K++ LR E
Sbjct: 343 EYENDLTVKKLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIE 388
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.8
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +3
Query: 324 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 503
+QLQ+ + S LK LD V+ L+ NR+L K +E+ Y
Sbjct: 377 EQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALEST-----IKTLEEDVYTMKNK 431
Query: 504 LKKIQALKK----EKETLAHHYEREEECLTNDLSRKLNQLRQE 620
+ +++ + K E++ L EE L RKL+ QE
Sbjct: 432 IIELEGILKSANVERDGLVEKLIAEE-----TLRRKLHNTIQE 469
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 306 PSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSL 437
P+ S + ++ L+QQ VL L+ K +V L+E RSL
Sbjct: 331 PNGPSASAIDNDLKMLEQQLNVLGRHLEGRKSQVAKLEERLRSL 374
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 405 VKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALK-KEKETLAHHYER 563
++ L + N L S+ A +Q + + LLKK + L+ KEK+ L HYE+
Sbjct: 436 LEKLIKNNSCLEAELPSMYAAFDQSQ----SRLLKKYEELETKEKKALEMHYEK 485
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 507 KKIQALKKEKETLAHHYEREEECLTNDLSRK 599
+K+Q +K+E+ LA+H E E L + +RK
Sbjct: 202 RKLQWVKEERTMLANHLEALERKLIDARNRK 232
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 300 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVS 455
L T ++ + + QQ+ L++ELD K K ++EE + LR+ S
Sbjct: 647 LEEQTQLAEKYHEELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHES 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,441
Number of Sequences: 5004
Number of extensions: 45269
Number of successful extensions: 204
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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