Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g02
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_55831| Best HMM Match : G10 (HMM E-Value=9.2)                       28   8.9  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   8.9  

>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 129  ESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 272
            E +  K+ST ETFQR+R +    LN   Y   +      D++ ++N D
Sbjct: 1159 EEVHWKLSTEETFQRMRLRMTQNLN---YSYHMEASNARDNKSDENLD 1203


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 432 HTDGLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILC 560
           H  GLI    IL +  CKK L  Y++G+      F +C  +LC
Sbjct: 103 HLYGLIHARYILSERGCKKMLYKYLQGD------FGHCPRVLC 139


>SB_55831| Best HMM Match : G10 (HMM E-Value=9.2)
          Length = 161

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDY 275
           +S++I  T   Q LR  +    NK+K  S L       ++QN N  Y
Sbjct: 43  MSERICCTTLLQELRGSSTKKENKLKKKSPLAWDRTRSEEQNGNHTY 89


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 372 SNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYI 506
           SNG    + P +    F  +  D L   +L++C  CC   + DY+
Sbjct: 100 SNGLPVFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLVMDYL 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,378
Number of Sequences: 59808
Number of extensions: 276976
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)