Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g01
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...   131   8e-32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.5  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    26   4.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   6.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   6.1  

>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score =  131 bits (317), Expect = 8e-32
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 5/162 (3%)
 Frame = +1

Query: 145 ISLDDL-FSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYEDEMVCSKECLPN-YEEKIK 318
           +S +DL  +K    +   ++ T+  DG+++    E G+   DE+V S++ L + Y+  +K
Sbjct: 22  VSAEDLEAAKVSYRHHDGDLHTF-ADGLMK----EYGFKNRDEVVVSRKGLGDRYDNMVK 76

Query: 319 SFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYHRFTLDTNNY 498
            F+ EHLH DEEIR ILDG+GYFDVR  +D+W+RI V KGD++++P GIYHRFT  T++Y
Sbjct: 77  KFFEEHLHEDEEIRLILDGNGYFDVRSVDDRWVRIFVEKGDLIILPPGIYHRFTTTTDDY 136

Query: 499 IKAKRFFIGEPVWLPYNR---PADEMPCRKDYVEKLQSGFSV 615
           I A R F   P W+  +R    ++E+  RK Y+  ++    V
Sbjct: 137 IHAMRLFHENPKWIALSRTDSTSEELDARKSYLNSIKKSVYV 178


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 410 NGSVLPCPRETCWSSRAVSTTGSLWTPIT 496
           N S LP    +C +S ++  TG+  TP+T
Sbjct: 274 NSSPLPTTSTSCTTSTSIPPTGNSTTPVT 302


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 118 QHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYEDEMVCSKECLP 297
           Q HK   E + L  + S T +E  K   +  K + VLE  K ++  T E ++      L 
Sbjct: 510 QEHKKEVEALQLQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLS 569

Query: 298 NYEEKIKSF 324
            Y  + K +
Sbjct: 570 QYYRESKEY 578


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 248 RSFLSFSSTPSVLYVSMFILKYSTPVLENKSSREI 144
           R+    + T S L +S  I + S+P LENKS + +
Sbjct: 11  RTMTEKARTVSDLTISQAIFELSSPFLENKSQKAL 45


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -1

Query: 275 TISSSYV*PRSFLSFSSTPSVLYVSMFILKYSTPVLENKSSREIYSGGFLWCCSRWSVVS 96
           ++SSS V P S ++ +STP  + VS   L   TP      S  + + G        +V S
Sbjct: 238 SLSSSSVLPTSIITSTSTP--VTVSSSSLSSFTP----SYSTNLTTTGSTTTTGSATVSS 291

Query: 95  LSMYHACTILKTKIIN*ICTYVNNLSHYPT 6
              Y   +++ T + + + ++ ++ S Y T
Sbjct: 292 SPFYSNSSVIPTSVPSSVSSFTSSSSSYTT 321


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +2

Query: 437 ETCWSSRAVSTTGSLWTPITT*KQNVSSSVSRFG--CLTIGRLMRCRAGKTTLRNYRADS 610
           +TC     + + G   T IT    + S+ VS      L+    +   +G+ T  N    S
Sbjct: 42  DTCLRYTTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTS 101

Query: 611 Q*QHNVIKLTFF 646
             +HN   +TFF
Sbjct: 102 SQRHNTKTITFF 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,023
Number of Sequences: 5004
Number of extensions: 73118
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)