Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g01
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 31 0.92
SB_3762| Best HMM Match : MTS (HMM E-Value=0.11) 31 1.2
SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9) 30 1.6
SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_19590| Best HMM Match : RVT_thumb (HMM E-Value=5.3) 29 2.8
SB_52687| Best HMM Match : Myb_DNA-binding (HMM E-Value=2.7e-09) 29 3.7
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52) 29 4.9
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054) 28 6.5
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4) 28 8.5
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 274 PSHLHMCNLVHS*VFLVLHQFYMCLCLF*NIQPPF*RINHPEKYILEDFYGV 119
P H + CNL+ LV+ Y+CL ++ + F IN P++Y +F G+
Sbjct: 676 PIHPNDCNLLGGAGSLVIMWIYICLLVY--ARRRFYLINSPKRYTTLEFMGI 725
>SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)
Length = 286
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Frame = +1
Query: 61 VFKMVQAWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTD--GVLEK 234
+F ++Q +D + ++ + H P ++L+ + T +E K+ I + + G LE
Sbjct: 132 IFALLQNATVDFQDYNEEVLEHFTLPN-VTLNLAANSTSIEE-KLEITNFFSGDWGKLES 189
Query: 235 LKN-ERGYTYEDEMVCSKECLPNYE--EKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 405
N E+ +++ + E + N + +K+ SF+ HL + F+ S YF V G
Sbjct: 190 FINPEKCQEKCYDVILTAETIYNVDNYDKLHSFFEAHLKRPGGVVFVAAKSHYFGVGGGI 249
Query: 406 DQWIRIAVSKG 438
+ + KG
Sbjct: 250 GTFATMVQEKG 260
>SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)
Length = 487
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 391 VRDGEDQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAK 510
+ D + W+ VS + +PS I ++FT+D NY+ +K
Sbjct: 392 MNDALNDWMISPVSSSEHAALPSYIRNQFTIDGLNYLLSK 431
>SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 229 EKLKNERGYTYEDEMVCSKECLPNYEE-KIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 405
E+L + R + + + L EE K+K FY E HT E + + +G DG
Sbjct: 11 ERLAHNRNRRHSVNLAQIQRILSKREERKLKEFYIERSHTTEFLHRLHVTTGSLKDHDGR 70
Query: 406 DQWIRIAVSKGD 441
++ ++ S D
Sbjct: 71 TRFSQVVYSYRD 82
>SB_19590| Best HMM Match : RVT_thumb (HMM E-Value=5.3)
Length = 243
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +1
Query: 196 NIDTYKTDGVLEKLKNE----RGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRF 363
N TY DG K K + RGYT +DE V + L ++ I+ + + I F
Sbjct: 38 NFSTYLADGATWKKKTKTEPLRGYTDDDETVQQSKRLTAQQKAIRQHFGFQVTGAHFIDF 97
Query: 364 ILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYH 471
+ D D R ED + R+ D L+ P+ + H
Sbjct: 98 V-DIHLEPDERP-EDLFQRLMAFAEDSLLKPNNLTH 131
>SB_52687| Best HMM Match : Myb_DNA-binding (HMM E-Value=2.7e-09)
Length = 166
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 292 LPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRI 423
LP++ EKI ++ H T+ E++++ +G F G+ W +I
Sbjct: 103 LPDFSEKIYTYQGRHTWTESELKWLEEGVELF----GKGHWSKI 142
>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
Length = 1183
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = +1
Query: 73 VQAWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYF-KINIDTYKTDGVLEKLKNER 249
+Q WY + Q+ Q P + +D+L ++ V +F K D + + +
Sbjct: 940 IQKWYRRIKCAQQQAQVPFTAPPTLQVDELMYQSTVLHFDKFKADASECSVCRVRFSLQT 999
Query: 250 GYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDE 351
G D V S+ +P +EE + H E
Sbjct: 1000 G----DGYVTSEVAMPTFEEHVSEGSPHHQRVAE 1029
>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
Length = 304
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 409 QWIRIAVSKGDMLVIPSGIYHRFTLDTNNYI 501
++ RI ++KGD + +P GI+H + +N Y+
Sbjct: 87 KYSRITMNKGDCIFVPGGIWHH--VRSNGYM 115
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 298 NYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDG 402
+YE+ F+ + I + DGSG +D +DG
Sbjct: 68 SYEDMASKFFEHFTQISDAINSMRDGSGLWDEQDG 102
>SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 351 LIGMQVLSVKRFYLLLVIRKTFLGTDHLIFICVTSFILKFF*YS 220
L+G+Q LS Y L V LG ++ + + +I++FF YS
Sbjct: 388 LVGIQCLSSMTLYYLSVFLLRKLGHIRVLCVGLLVYIVRFFYYS 431
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 55 IFVFKMVQAWYMDSETTDQRLQHHKNPPEYISLDDLF 165
+F FK+V+ + E QR+ + P Y+S+D+L+
Sbjct: 419 LFSFKIVEPFINGKEEEKQRIVTIEQPLGYLSMDNLY 455
>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
Length = 526
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 298 NYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDG 402
+YE+ F+ + I + DGSG +D +DG
Sbjct: 472 SYEDMASKFFEHFTQISDAINSMRDGSGLWDEQDG 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,851,718
Number of Sequences: 59808
Number of extensions: 522971
Number of successful extensions: 1457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -