Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f24
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    33   0.042
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.6  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.1  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.1  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.8  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   3.7  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    26   4.8  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.4  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
 Frame = -3

Query: 541 TSLEPNRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 362
           +SL  +    +PS         +S  PTS ++    S  ++  + +  + S+  L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235

Query: 361 SRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATV---NFCVRSSILAITSFVS 191
           S    + S  + S+S  +T  SL++  S   AS+ S+ +++   +    SS  + +S +S
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291

Query: 190 ISTAGAYLPVHST*GMTSSKSHS 122
            S++ +  P  ++  ++SS S S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSS 314


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 201 DVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLAN 380
           D  +KID LT+KL VAN   AE N +L   A E +   +  + +        +E  Q  N
Sbjct: 618 DSASKIDSLTEKLKVAN---AEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQSTN 674


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 255 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 380
           DL +ANR L       ANE +  +RD    R+D  + +R+  QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 54  LITKSGVIQLIMKSKLPYAIELQEWLL 134
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 477 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 635
           ++ R + RS+GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/75 (18%), Positives = 36/75 (48%)
 Frame = +3

Query: 198 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLA 377
           ND++   D+L     +  ++  E     ++ +N    +R+  +  ++   N+R+  ++  
Sbjct: 19  NDLVRSSDELLNHRAIQESEQIETAADALITSNIGHRSRQRKKKTKK-ATNSRKPLSKFQ 77

Query: 378 NRMADIAQDVIAKPS 422
           +   ++ +D I KPS
Sbjct: 78  SNTEEVNEDPILKPS 92


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -3

Query: 283 MSDRLASAKSALATVNFCVRSSILAI-----TSFVSISTAGAYLPVHST*GMT 140
           + DRL SA+S   T   C+ ++ LA      T +VS  T G +  V S  G+T
Sbjct: 128 IKDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLT 180


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 484 CARKNDRWAAA*NDW 528
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
 Frame = -3

Query: 478 ANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV--------SRRAFSQSCRAVS 323
           ++SL  +S T+    S  +   ++ S + ++  LAS +         +  A S S  + +
Sbjct: 126 SSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185

Query: 322 ASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYLPVHST*GM 143
           AS  AT  SLA   S  L S  SA AT +    SS  A  S  S S A + L  +ST   
Sbjct: 186 ASNSATSSSLA---SSSLNSTTSATATSSSL--SSTAASNSATSSSLASSSL--NSTTSA 238

Query: 142 TSSKS 128
           T++ S
Sbjct: 239 TATSS 243


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 171 YAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCEN 350
           YAP+V      +   I  L + +  A   LA    SL+LF   + V  +D ET   +  +
Sbjct: 146 YAPSVAKANEGLAKAIAGLAKYVAKAIQGLAHIILSLLLFILGLEVIEQDEETGDVEMSS 205

Query: 351 AR 356
            R
Sbjct: 206 MR 207


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 285 LFANEMIVARRDAETARQDCE 347
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,825
Number of Sequences: 5004
Number of extensions: 58486
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)