Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f24
         (735 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    30   2.8  
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA...    30   2.8  
AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p pro...    29   8.7  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   8.7  

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -3

Query: 373 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 194
           SC  +++ +  S RAVS +    +I     +SD  A A S +  ++  ++   LA   + 
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841

Query: 193 SI 188
            +
Sbjct: 842 QL 843


>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
            protein.
          Length = 2733

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = +3

Query: 204  VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 383
            V+A++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131

Query: 384  MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 560
            +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185

Query: 561  V 563
            V
Sbjct: 2186 V 2186


>AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p
           protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = +3

Query: 204 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 383
           V+ ++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 135 VVTRMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 188

Query: 384 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 560
           +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 189 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 242

Query: 561 V 563
           V
Sbjct: 243 V 243


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 400  CAMSAMRLASCAVSRRAFSQSCRAV 326
            C +   + ASCAV  R + Q CR V
Sbjct: 2148 CNLPCTKTASCAVGERCYQQVCRKV 2172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,267,073
Number of Sequences: 53049
Number of extensions: 741819
Number of successful extensions: 2918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2911
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)