Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f23
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.59
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 2.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.1
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 26 3.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.1
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 4.2
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 4.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 7.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 9.6
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 24 9.6
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 9.6
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 0.59
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 400 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 293
CCN++ H + H +N TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 1.4
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -1
Query: 197 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 39
FT FLS +G SNT+ V+ + L AD ++R + + F R + +TT L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206
Query: 38 N*DD 27
DD
Sbjct: 207 EDDD 210
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 257 LQHIAPSITL*FFKYVL*MYFTSRFLSA 174
L H++P I+ +KY L F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 3.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 241 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 381
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 453 FFLIKFGIYLYTIFWVILVV 394
FFL+ FG+Y +T+ +LV+
Sbjct: 21 FFLVVFGLYSFTLILHLLVI 40
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 392 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 300
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 283 LDRNQLQNTDMEVLESLEYTSDNVE 357
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 320 CWKV*NTLVTTLNCYAKKY 376
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 325 ESLEYTSDNVELLCKKVCVIVDNYNKYY 408
+S+EY +N++ + K+ +VD N YY
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYY 255
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 341 VYSKLSNTSMSVFCS 297
VYS L+NT++ FCS
Sbjct: 133 VYSSLANTTLEEFCS 147
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 130 FNIMHLTA-NVLLVPNALKKRDVKYIYNTYLKNYSVIE 240
+N++ TA NV+ + + +++Y N + K Y +IE
Sbjct: 724 YNMLRTTAVNVIRHLGVVGECNIQYALNPFTKEYCIIE 761
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 244 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLCKKVCVI 384
A C D L L Q NTD +V ++L ++D+ +L+ K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 268 LAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNKYYPKN 417
LA V +R + N + + ++ + T + KV ++DNY K P N
Sbjct: 760 LAEVFRERKKASNKEKK--KNAQETKQQIVQFKVKVIDLIDNYYKTQPNN 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,937
Number of Sequences: 5004
Number of extensions: 43894
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -