Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f20
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   204   9e-54
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   204   9e-54
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    52   8e-08
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.4  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.8  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  204 bits (497), Expect = 9e-54
 Identities = 94/140 (67%), Positives = 117/140 (83%)
 Frame = +3

Query: 39  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 218
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 219 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 398
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 399 CEPKKFGGPGARARYQKSYR 458
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  204 bits (497), Expect = 9e-54
 Identities = 94/140 (67%), Positives = 117/140 (83%)
 Frame = +3

Query: 39  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 218
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 219 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 398
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 399 CEPKKFGGPGARARYQKSYR 458
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 41/128 (32%), Positives = 60/128 (46%)
 Frame = +3

Query: 60  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 239
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 240 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 419
           GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 420 GPGARARY 443
            P AR +Y
Sbjct: 120 QPKARKKY 127


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 129  GRLHAAFHDHACNTQLRWRFS 67
            GRLH+ F++H C + L+  FS
Sbjct: 1061 GRLHSLFNEHFCKSNLQLFFS 1081


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 161 QQSGLNQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 30
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,490
Number of Sequences: 5004
Number of extensions: 47426
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)