Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f20
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   220   6e-58
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           219   8e-58
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   219   8e-58
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   3e-05
At1g43570.1 68414.m05001 hypothetical protein                          31   0.40 
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    29   2.8  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    29   2.8  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    29   2.8  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    29   2.8  
At3g02875.1 68416.m00281 IAA-amino acid hydrolase 1 (ILR1) ident...    28   3.7  
At5g40090.1 68418.m04863 disease resistance protein-related cont...    27   6.5  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   8.6  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    27   8.6  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   8.6  
At3g24255.1 68416.m03045 expressed protein                             27   8.6  
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei...    27   8.6  

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  220 bits (537), Expect = 6e-58
 Identities = 98/145 (67%), Positives = 126/145 (86%)
 Frame = +3

Query: 24  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 203
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 204 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 383
           +F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 384 ADPRRCEPKKFGGPGARARYQKSYR 458
           ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  219 bits (536), Expect = 8e-58
 Identities = 97/145 (66%), Positives = 126/145 (86%)
 Frame = +3

Query: 24  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 203
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 204 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 383
           +F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 384 ADPRRCEPKKFGGPGARARYQKSYR 458
           ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  219 bits (536), Expect = 8e-58
 Identities = 96/139 (69%), Positives = 124/139 (89%)
 Frame = +3

Query: 42  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 221
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 222 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 401
           +R+   GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 402 EPKKFGGPGARARYQKSYR 458
           E KKFGGPGARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +3

Query: 60  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 239
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 240 GGGHVAQVYAIRQAISKAL 296
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 400 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 293
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  SCVLQAWSWNAACKRPSIGLG*AQTAAVQTSRANP 187
           +C +QA +W   CKR  +    A+ AAV +S A P
Sbjct: 631 ACFIQA-AWRRYCKRKKMEEAEAEAAAVSSSTAGP 664


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  SCVLQAWSWNAACKRPSIGLG*AQTAAVQTSRANP 187
           +C +QA +W   CKR  +    A+ AAV +S A P
Sbjct: 638 ACFIQA-AWRRYCKRKKMEEAEAEAAAVSSSTAGP 671


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  SCVLQAWSWNAACKRPSIGLG*AQTAAVQTSRANP 187
           +C +QA +W   CKR  +    A+ AAV +S A P
Sbjct: 638 ACFIQA-AWRRYCKRKKMEEAEAEAAAVSSSTAGP 671


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 120 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF 4
           H   HD+  NT   W  S+++      W    PP  +P+
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPPMCKPW 60


>At3g02875.1 68416.m00281 IAA-amino acid hydrolase 1 (ILR1)
           identical to IAA-amino acid hydrolase 1 (ILR1)
           [Arabidopsis thaliana] SWISS-PROT:P54968
          Length = 442

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 207 IFPCRAKGLALEVCTAAVWAQPSPMDGRLHAAFHD 103
           +F  RA   AL +     W   S +DG++HA  HD
Sbjct: 107 VFGLRADMDALPLQELVEWESKSKVDGKMHACGHD 141


>At5g40090.1 68418.m04863 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 385

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 195 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 341
           G+E++    +++  K GGH+ +V+ + +A     +  ++   D   +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 180 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 287
           P+L L + K S V+ RV V+  GH+A      +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 183 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 317
           ++ +G E+   V I ++  GGGH A   AIR A     I F  KY
Sbjct: 60  LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 130 VHWTWLSPDCCSTNFKSQSFCSARKNSPWS 219
           ++W W   DC    F S  F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 397 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 293
           R G  T++ LS+  R+ LIS    S T FW  A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176


>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
           similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
           profile PF00641: Zn-finger in Ran binding protein and
           others
          Length = 288

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 142 WLSPDCCSTNFKSQSFCSARK-NSP 213
           W  P+C + NF  ++ C+ RK N+P
Sbjct: 198 WTCPNCGNVNFSFRTVCNMRKCNTP 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,947
Number of Sequences: 28952
Number of extensions: 274230
Number of successful extensions: 854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)