Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f19
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   81   4e-16
SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69)                28   3.4  
SB_1406| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)                        28   4.4  
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)                    27   7.7  
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   27   7.7  

>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 36/93 (38%), Positives = 56/93 (60%)
 Frame = +1

Query: 145 QEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF 324
           +E+     +L+C++ ++QG N TV+LRN++Y+ G IE VDGFMNI  K+  +    G   
Sbjct: 4   RERAIAERSLVCLIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVD 63

Query: 325 AFDNLFIHGRNIRYVHIPENMSLLSTIRHEVSK 423
               +F+ G  IRYVHIP+ + +   I  E+ K
Sbjct: 64  NLPAMFVVGTQIRYVHIPDEIDMRKAIEQELGK 96


>SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 349 GRNIRYVHIPENMSLLSTIRHEVSKKFYKPHMKQ 450
           GRN+ Y+++PE  SL++   +   +KF + ++K+
Sbjct: 99  GRNLAYMNLPEKSSLVAVDYNPHMEKFLRENLKK 132


>SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
          Length = 296

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 130 FIGTPQEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVC 243
           F G+P    F ++T  C  +S +G + T+    DTY C
Sbjct: 104 FKGSPNTILFPYDTYDCAPSSFKGSSNTILFPYDTYDC 141


>SB_1406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 130 FIGTPQEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVC 243
           F G+P    F ++T  C  +S +G + T+    DTY C
Sbjct: 104 FKGSPNTILFPYDTYDCAPSSFKGSSNTILFPYDTYDC 141


>SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)
          Length = 421

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 247 LIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVHIPENMSLL 396
           ++E  +GF N+   NA  C  + + F FD      +   Y H+P  ++ L
Sbjct: 274 VVEPPNGFANLRVINAAPCPLKVSGFGFDTSLAVDKASVYAHVPITLTNL 323


>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNL 339
           G  +T DLR + +V   +   +  + + ++N  +CD +  E A+  L
Sbjct: 750 GVTITRDLRWNRHVAETVSKANKILGLLWQNLHFCDTKAKEAAYVGL 796


>SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)
          Length = 43

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNI 279
           +NSL GK V + L+      G +  VDG+MN+
Sbjct: 11  LNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNL 42


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 199  GKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAF 330
            G  +T DLR + +V   +   +  + +  +N  +CD +  E A+
Sbjct: 1057 GVKITTDLRWNRHVAETVSKANKILGLLRRNLHFCDTKAKEAAY 1100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,199
Number of Sequences: 59808
Number of extensions: 279508
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)