Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f19
(467 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 85 1e-16
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 85 1e-16
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 53 6e-07
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 53 6e-07
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 53 6e-07
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 53 6e-07
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 53 6e-07
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 53 6e-07
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 53 6e-07
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 53 6e-07
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 53 6e-07
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 53 6e-07
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 53 6e-07
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 53 6e-07
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 40 0.004
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 40 0.004
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 40 0.004
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 40 0.004
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 40 0.004
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 39 0.010
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 39 0.010
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 39 0.010
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 39 0.010
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 39 0.010
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 39 0.010
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 39 0.010
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 39 0.010
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 38 0.023
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 30 3.5
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 30 3.5
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 30 3.5
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 30 3.5
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 85.0 bits (201), Expect = 1e-16
Identities = 37/91 (40%), Positives = 60/91 (65%)
Frame = +1
Query: 145 QEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF 324
+E+ N+L+ ++ LQG+ TVDLR+++ G I+ VD FMNI Y D G++
Sbjct: 8 KERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV 67
Query: 325 AFDNLFIHGRNIRYVHIPENMSLLSTIRHEV 417
D+LF+ GRN+RYVHIP+++++ STI ++
Sbjct: 68 KLDDLFVTGRNVRYVHIPDDVNITSTIEQQL 98
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 85.0 bits (201), Expect = 1e-16
Identities = 37/91 (40%), Positives = 60/91 (65%)
Frame = +1
Query: 145 QEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF 324
+E+ N+L+ ++ LQG+ TVDLR+++ G I+ VD FMNI Y D G++
Sbjct: 8 KERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV 67
Query: 325 AFDNLFIHGRNIRYVHIPENMSLLSTIRHEV 417
D+LF+ GRN+RYVHIP+++++ STI ++
Sbjct: 68 KLDDLFVTGRNVRYVHIPDDVNITSTIEQQL 98
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 190 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 363
SL GK+V V+L+ND +CG + VD ++NI + DP+ + + N FI G +R
Sbjct: 9 SLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVR 68
Query: 364 YVHIP 378
YV +P
Sbjct: 69 YVQLP 73
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + VT++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + VT++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + VT++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + VT++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + VT++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 38.7 bits (86), Expect = 0.010
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + Q + V+L+N G + D +MNI+ + I G++F +I G
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKK 426
I+Y+ IP+ ++ ++ EV K
Sbjct: 64 STIKYLRIPD--EIIDMVKEEVVAK 86
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 37.5 bits (83), Expect = 0.023
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + V ++L+N T V G I VD MN K + L I G NIRY
Sbjct: 10 LSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI 69
Query: 373 IPENMSLLSTIRHEVSKK 426
+P+++ L T+ +V K
Sbjct: 70 LPDSLP-LDTLLVDVEPK 86
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 199 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNIRYV 369
G+ V V L + G++ +DG+MNI+ + Y + Q + + FI G N+ Y+
Sbjct: 17 GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN-KYGDAFIRGNNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 199 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNIRYV 369
G+ V V L + G++ +DG+MNI+ + Y + Q + + FI G N+ Y+
Sbjct: 17 GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN-KYGDAFIRGNNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 199 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNIRYV 369
G+ V V L + G++ +DG+MNI+ + Y + Q + + FI G N+ Y+
Sbjct: 17 GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN-KYGDAFIRGNNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 199 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNIRYV 369
G+ V V L + G++ +DG+MNI+ + Y + Q + + FI G N+ Y+
Sbjct: 17 GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN-KYGDAFIRGNNVLYI 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,656,912
Number of Sequences: 237096
Number of extensions: 1353942
Number of successful extensions: 5646
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5641
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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