Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f19
(467 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta... 46 1e-05
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put... 44 7e-05
At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1, put... 44 7e-05
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 39 0.002
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 35 0.024
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 33 0.13
At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SD... 30 0.90
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD... 27 4.8
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 27 6.3
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 27 8.4
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 27 8.4
>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
putative / snRNP core SM-like protein, putative / U6
snRNA-associated Sm-like protein, putative similar to
SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
SnRNP core SM-like protein SM-x5) [Homo sapiens]
Length = 93
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKN--AIYCDPQGNEFAFDNLFIHGRNIRY 366
L G+ VTV+L+ND + G + VD ++NI +N + D + + N FI G +RY
Sbjct: 10 LVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
Query: 367 VHIPEN 384
V +P++
Sbjct: 70 VQLPKD 75
>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to small nuclear ribonucleoprotein
Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
[Mouse] SWISS-PROT:P13641
Length = 116
Score = 43.6 bits (98), Expect = 7e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQG-NEFAFDNLFIHGRNIRYV 369
L + V+++L+N T V G I VD MN K A+ +G N D+L + G NIRY
Sbjct: 10 LNNETVSIELKNGTIVHGTITGVDVSMNTHLK-AVKLTLKGKNPVTLDHLSVRGNNIRYY 68
Query: 370 HIPENMSL 393
+P++++L
Sbjct: 69 ILPDSLNL 76
>At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to SWISS-PROT:SP|P13641 small
nuclear ribonucleoprotein Sm D1 (snRNP core protein D1,
Sm-D1, Sm-D autoantigen)[Mouse]
Length = 114
Score = 43.6 bits (98), Expect = 7e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 193 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 372
L + V+++L+N T V G I VD MN K N D+L + G NIRY
Sbjct: 10 LNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYI 69
Query: 373 IPENMSL 393
+P++++L
Sbjct: 70 LPDSLNL 76
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 175 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 351
L ++ + QG + V+L+N G + D +MNI + I G+ F +I G
Sbjct: 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRG 63
Query: 352 RNIRYVHIPENMSLLSTIRHEVSKKFYKP 438
I+Y+ +P+ ++ ++ E ++ KP
Sbjct: 64 NTIKYLRVPD--EVIDKVQEEKTRTDRKP 90
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 35.1 bits (77), Expect = 0.024
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 184 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNI 360
+ S++GK V V L + G++ +DG+MNI+ + Y + Q + + F+ G N+
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKN-TYGDAFVRGNNV 77
Query: 361 RYV 369
Y+
Sbjct: 78 LYI 80
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 32.7 bits (71), Expect = 0.13
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 184 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRNI 360
+ S++G+ V V L + G + +DG+MNI+ + Y + Q + + FI G N+
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN-KYGDAFIRGNNV 77
Query: 361 RYV 369
Y+
Sbjct: 78 LYI 80
>At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SDR)
family protein C-terminal similar to dormancy related
protein GI:1220178 from [Trollius ledebourii]
Length = 288
Score = 29.9 bits (64), Expect = 0.90
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 158 KNFS*GVPMKSAASDMFFALDYLLLVGNECNDY 60
KNF VPMK A + A Y+ L N C+ Y
Sbjct: 240 KNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSY 272
>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 289
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 158 KNFS*GVPMKSAASDMFFALDYLLLVGNECNDY 60
K F PMK AA + A Y+ L N C+ Y
Sbjct: 241 KQFGSETPMKRAAQPVEVAPSYVFLACNHCSSY 273
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 100 KAKNMSDAALFIGTPQEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVD 264
+ +++S+ + QE ++ H+T + +LQGK V +ND +C ++D
Sbjct: 953 RPEDISEEKAYASDIQELYYSHDTYILPPEALQGK-CEVRKKNDMPLCREYPILD 1006
>At4g38780.1 68417.m05491 splicing factor, putative strong
similarity to splicing factor Prp8 [Homo sapiens]
GI:3661610; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 2332
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 334 NLFIHGRNIRYVHIPENMSL 393
NL IH +N+ Y+H+ N +L
Sbjct: 503 NLLIHRKNLNYLHLDYNFNL 522
>At1g80070.1 68414.m09373 splicing factor, putative strong
similarity to splicing factor Prp8 [Homo sapiens]
GI:3661610; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 2382
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 334 NLFIHGRNIRYVHIPENMSL 393
NL IH +N+ Y+H+ N +L
Sbjct: 551 NLLIHRKNLNYLHLDYNFNL 570
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,468
Number of Sequences: 28952
Number of extensions: 197642
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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