Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f18
         (235 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04340.3 68417.m00621 early-responsive to dehydration protein...    27   1.7  
At4g04340.2 68417.m00620 early-responsive to dehydration protein...    27   1.7  
At4g04340.1 68417.m00619 early-responsive to dehydration protein...    27   1.7  
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE...    27   2.2  
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu...    25   6.7  
At4g22120.1 68417.m03198 early-responsive to dehydration protein...    25   6.7  
At4g08530.1 68417.m01404 protease inhibitor/seed storage/lipid t...    25   6.7  
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila...    25   8.9  
At1g62320.1 68414.m07032 early-responsive to dehydration protein...    25   8.9  

>At4g04340.3 68417.m00621 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 VAVPVNWENDNLSVLLKHLHNLNLIGIE 199
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


>At4g04340.2 68417.m00620 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 VAVPVNWENDNLSVLLKHLHNLNLIGIE 199
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


>At4g04340.1 68417.m00619 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 VAVPVNWENDNLSVLLKHLHNLNLIGIE 199
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
           sigma-like factor (SIG5) identical to RNA polymerase
           sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
           sigma-like factor [Arabidopsis thaliana] GI:4033838;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 517

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 130 DGHGHNDFTAERKNFENGRDKLFAIVNNVAAERRL 26
           DG      +  RK  E+G +K   + NNV  E+R+
Sbjct: 124 DGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRM 158


>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to Apc1/Tsg24
           protein, the largest subunit of human anaphase-promoting
           complex (APC/C) GI:11967711 from [Homo sapiens]
          Length = 1678

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 51  LTIANSLSRPFSKFLRSAVKSLWPCP 128
           LTI N+     S  L   VKS+WP P
Sbjct: 111 LTIYNTSGEVVSVPLMRTVKSIWPLP 136


>At4g22120.1 68417.m03198 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 771

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 VAVPVNWENDNLSVLLKHLHNLNLIGIE 199
           V VPVNW N+ L  + K L N+    I+
Sbjct: 119 VLVPVNWTNNTLE-MAKQLRNVTSSDID 145


>At4g08530.1 68417.m01404 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 103

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 186 RFRLCKCFKSTLKLS-FSQLTG 124
           R  LCKCF+  LK S F++L G
Sbjct: 51  RLALCKCFQEILKDSRFTKLIG 72


>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 894

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 63  NSLSRPFSKFLRSAVKSLWPCPSIGKTI 146
           N L + FS  L+ A KSL  CP+  K I
Sbjct: 539 NVLQQYFSGSLKDAAKSLGVCPTTLKRI 566


>At1g62320.1 68414.m07032 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 769

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 116 VAVPVNWENDNLSVL-LKHLHNLNLIGIEIVN 208
           + VPVNW +D L +  L+++ + N+  + I N
Sbjct: 119 ILVPVNWTSDGLQLAKLRNVTSSNIDKLSISN 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,087,231
Number of Sequences: 28952
Number of extensions: 82897
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 57
effective length of database: 10,420,296
effective search space used: 208405920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)