Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f15
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14570.2 68414.m01733 UBX domain-containing protein contains ...    29   3.1  
At1g14570.1 68414.m01732 UBX domain-containing protein contains ...    29   3.1  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.4  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    28   5.4  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.4  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   9.4  
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a...    27   9.4  

>At1g14570.2 68414.m01733 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 297 LKHTMNTEDVCAHML--DIVSFERIKEYIRANLGHFTVITDKCSKRKVCLHHK 449
           L +  +T +  +HML  D  + + + + I+AN   + V  D    RKVC ++K
Sbjct: 202 LVNLQSTTEFSSHMLNRDTWANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYK 254


>At1g14570.1 68414.m01732 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 297 LKHTMNTEDVCAHML--DIVSFERIKEYIRANLGHFTVITDKCSKRKVCLHHK 449
           L +  +T +  +HML  D  + + + + I+AN   + V  D    RKVC ++K
Sbjct: 202 LVNLQSTTEFSSHMLNRDTWANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYK 254


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 561 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 433
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 593 KLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN---YILNVM 706
           +L+NKLE     +  +D+++   N +E+K+I    YIL++M
Sbjct: 332 ELINKLEIMKRAQQELDKVVGKNNIVEEKHITKLPYILSIM 372


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 561 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 433
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 561 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 442
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
           anther-specific protein ATA27 contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to
           anther-specific protein ATA27 (GI:2746341)  [Arabidopsis
           thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 VQGSHQHAQAHNEYRRRLRAHVGHRV 352
           + G H H   + +Y + ++ H+GHR+
Sbjct: 303 ILGWHLHPTTYGDYPQSMKDHIGHRL 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,264
Number of Sequences: 28952
Number of extensions: 318179
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)