Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f14
         (129 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    22   2.3  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    21   7.1  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    20   9.4  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 21  SASWQELASLIXRL 62
           SASW+E+A+ + R+
Sbjct: 613 SASWEEIAAAVERM 626


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
          transcriptase protein.
          Length = 1049

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 25 HPGRNWLLSSQG*TILYLKKYTA 93
          HP ++  L     T+L+L+ YT+
Sbjct: 6  HPTQHLFLDRPKTTVLHLRTYTS 28


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  SASWQELASLIXRLN 65
           SASW  +A+ + R+N
Sbjct: 556 SASWLAIANALQRIN 570


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,906
Number of Sequences: 2352
Number of extensions: 935
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 22
effective length of database: 512,235
effective search space used: 10244700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)