Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f14
         (129 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08720.1 68418.m01036 expressed protein                             26   4.0  
At1g67140.1 68414.m07638 expressed protein                             25   5.3  
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    25   9.2  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    25   9.2  

>At5g08720.1 68418.m01036 expressed protein
          Length = 719

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 19  CPHPGRNWL 45
           CPHPGR WL
Sbjct: 137 CPHPGRIWL 145


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 24  ASWQELASLIXRLNNFVFKKIYCI 95
           +SWQE+ +L+  +N F+F  I  I
Sbjct: 895 SSWQEIPTLLEYVNAFLFATIILI 918


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 4   FFYQSCPHPGRNWLL 48
           F YQ+ PH G +WL+
Sbjct: 571 FNYQAYPHAGTDWLI 585


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 4   FFYQSCPHPGRNWLL 48
           F YQ+ PH G +WL+
Sbjct: 590 FNYQAYPHAGTDWLI 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,774
Number of Sequences: 28952
Number of extensions: 21058
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 12,070,560
effective HSP length: 23
effective length of database: 11,404,664
effective search space used: 216688616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)