Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f12
(759 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.50
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.50
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.50
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.50
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.50
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 23 2.6
EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine hydroxy... 23 3.5
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 23 3.5
AY695257-1|AAW21974.1| 224|Tribolium castaneum intermediate neu... 22 4.6
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 22 6.1
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 21 8.1
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 616 WDRRNPITWNELEYIGGNDSNLIPN 690
W+ N + WNE EY G D + PN
Sbjct: 60 WNDYN-LKWNESEYGGVKDLRITPN 83
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 616 WDRRNPITWNELEYIGGNDSNLIPN 690
W+ N + WNE EY G D + PN
Sbjct: 60 WNDYN-LKWNESEYGGVKDLRITPN 83
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 616 WDRRNPITWNELEYIGGNDSNLIPN 690
W+ N + WNE EY G D + PN
Sbjct: 60 WNDYN-LKWNESEYGGVKDLRITPN 83
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 616 WDRRNPITWNELEYIGGNDSNLIPN 690
W+ N + WNE EY G D + PN
Sbjct: 60 WNDYN-LKWNESEYGGVKDLRITPN 83
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 616 WDRRNPITWNELEYIGGNDSNLIPN 690
W+ N + WNE EY G D + PN
Sbjct: 60 WNDYN-LKWNESEYGGVKDLRITPN 83
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -1
Query: 597 HFKIAGLVYGRWTKMNIHPXXXXXXXXXXXIWLPVVQRFVHSAFITKH 454
H G VYG+ + + H WL +RF S + +H
Sbjct: 318 HIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRH 365
>EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine
hydroxylase protein.
Length = 532
Score = 22.6 bits (46), Expect = 3.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 485 GSSIPLLSPNTELRSFEPAPQSV 417
G + LS ELR FEPA +V
Sbjct: 427 GELLHALSDKPELRPFEPAVTAV 449
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 138 CRRVNHSKQCN**CNHYDYT 79
C+R+ + KQC C DY+
Sbjct: 788 CKRIYNEKQCCKNCARVDYS 807
>AY695257-1|AAW21974.1| 224|Tribolium castaneum intermediate
neuroblasts defectiveprotein protein.
Length = 224
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 526 RDLNIAYLASSCSKVRPFRFYHQ 458
+D+N YL S S RP Y Q
Sbjct: 18 KDMNARYLPPSLSDTRPMLPYPQ 40
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 422 FAVPVQTIAILCLVIKAE 475
F + QTI I+C+++++E
Sbjct: 608 FLLITQTIFIICVIVQSE 625
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 379 DDFDLIKQRVVPHTLCGAGSN 441
DD L+K H+ C GSN
Sbjct: 23 DDVLLVKSEPQLHSPCATGSN 43
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,812
Number of Sequences: 336
Number of extensions: 4219
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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