Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f12
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    32   0.51 
Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    28   8.3  
AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinas...    28   8.3  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    28   8.3  
AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 34/138 (24%), Positives = 53/138 (38%)
 Frame = +1

Query: 343 YMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPDTLYLN 522
           Y+   ++A P Y    L +Q    +     G N   S +G + G ++P     P T    
Sbjct: 411 YIFVNTIANPGYHQISLKQQG--SYAFFVYGKNKLYS-YGYEGGANKPTVVLAPPTTPGP 467

Query: 523 LYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGDS 702
            + PV  ++    PT +  P+      T +N    NP T           +N I +P  S
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTSKQTNTI-SPHLS 526

Query: 703 LCDNSLVYSIPVVIPYRS 756
               S+V S P + P  S
Sbjct: 527 TITGSIVTSTPTMAPQTS 544


>Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical
           protein B0285.8 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 242 PRAAMLTNQSIINIELSI*NPGRPLPQRNTCFNSIWNTRLWPVLIMTILT*SNKGLCRTH 421
           P   M  +  ++ +  SI N   PL +  TC + + +  +  +L    +      +CRTH
Sbjct: 67  PVGHMKGSMFVVFMHSSILNATNPLAEFLTCLHCVLSGFVASLLACQFIF-RYLAVCRTH 125

Query: 422 FAVPVQTIAILCLV 463
           F V +Q I  LCL+
Sbjct: 126 FLVHLQGIN-LCLL 138


>AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinase
           CKB-1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 CFKDGNFYWPHNGDNIPDAACRNAYKSVYYKY 282
           CF +  ++ P    N+P A  R   + +YY++
Sbjct: 74  CFIENTYFVPMQDSNLPAAETREGREMIYYQW 105


>AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical
           protein T22E7.2 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 559 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 434
           K+EH   KP + +     + +S   +   R Y +T++C R N
Sbjct: 16  KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,548,264
Number of Sequences: 27780
Number of extensions: 389251
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)