Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f12
(759 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 29 0.063
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 29 0.063
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.77
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.77
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.77
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 5.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 7.2
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 7.2
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 9.5
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 28.7 bits (61), Expect = 0.063
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 631 PITWNELEYIGGNDSNLIPNPGD 699
PI+ E ++GGN N++P GD
Sbjct: 1855 PISVAETTFVGGNQGNVVPGNGD 1877
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 28.7 bits (61), Expect = 0.063
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 631 PITWNELEYIGGNDSNLIPNPGD 699
PI+ E ++GGN N++P GD
Sbjct: 1851 PISVAETTFVGGNQGNVVPGNGD 1873
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 607 KSNWDRRNPITWNELEYIGGNDSNLIPN 690
K W N + WNE EY G D + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 586 YFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGD--SLCD 711
Y + + + D+R P +EL YI + L P PG + CD
Sbjct: 1622 YQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCD 1665
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +1
Query: 484 PLNN-WKPDTLYLNLYQPVY 540
P N W+PDT+ N P Y
Sbjct: 83 PYNRVWRPDTILYNNADPQY 102
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
+KG ++ ++S T+ + + P P ++ G C
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
+KG ++ ++S T+ + + P P ++ G C
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.4 bits (43), Expect = 9.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = +1
Query: 577 EPSYFEVFITKSNWDRR 627
EP Y+ + + K NW ++
Sbjct: 209 EPIYYNLTMVKLNWPKK 225
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,384
Number of Sequences: 438
Number of extensions: 5313
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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