Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f12
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    33   0.21 
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    33   0.21 
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ...    31   1.1  
At1g16140.1 68414.m01934 wall-associated kinase, putative contai...    28   7.7  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 QYMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFG-DKSGMDEPLNNWKPDTLY 516
           ++ME  S A   + D D +K+ V    LC  GS D   +FG + + + + L +   +   
Sbjct: 56  EHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDCIQEKGK 115

Query: 517 LNLYQPVY 540
           LN + P Y
Sbjct: 116 LNGHNPKY 123


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 QYMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFG-DKSGMDEPLNNWKPDTLY 516
           ++ME  S A   + D D +K+ V    LC  GS D   +FG + + + + L +   +   
Sbjct: 56  EHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDCIQEKGK 115

Query: 517 LNLYQPVY 540
           LN + P Y
Sbjct: 116 LNGHNPKY 123


>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 418

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 GYLSLPTARQYKCFKDGNFYWPHNGDNIP 237
           G+   P A  Y C KDG +Y   NG+ +P
Sbjct: 39  GFYHDPNAGWYYCSKDGRYYKHENGEYVP 67


>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 690

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 IGPTMAITFPTPRAAMLTNQSIINIEL 289
           +G  +++T P P  A L N+ ++NI L
Sbjct: 41  VGTRLSVTAPLPGPAKLINREVVNISL 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,909
Number of Sequences: 28952
Number of extensions: 352701
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)