Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f10
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    28   7.6  

>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 246 ISNIFEYEFVVLEHNLSTVHVINAETKTKLGHINVSLNQNDPNV 377
           +SNI  Y  V+  HN  T+  +N   KT   ++ + L  +  N+
Sbjct: 484 VSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNL 527


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 562 VNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVNLVAVLRVC 696
           + G+ ++     VV +Y   E +    DE IE AH N   V+ VC
Sbjct: 217 IEGYAFDDKVAAVVVQYPNTEGRIHQFDELIESAHKNKSLVIMVC 261


>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 75  DLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSV--DVGSISELQKFNFKINRLTSYI 248
           D L +  FS+  C    +    V++ + N  + K+V  DV SIS+   F     R+T  +
Sbjct: 318 DRLLSYKFSYKGCGRM-VSKEEVIEHIINLPLRKNVELDVKSISDSPSFYLIRMRITGLL 376

Query: 249 SNIFEYEFVV 278
           S  FE  F V
Sbjct: 377 SKPFEISFKV 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,133,589
Number of Sequences: 27780
Number of extensions: 299667
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)