Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f10
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38730.1 68417.m05486 expressed protein 30 1.8
At5g62000.3 68418.m07784 transcriptional factor B3 family protei... 29 2.3
At5g62000.2 68418.m07783 transcriptional factor B3 family protei... 29 2.3
At5g62000.1 68418.m07782 transcriptional factor B3 family protei... 29 2.3
At4g29990.1 68417.m04266 light repressible receptor protein kina... 29 2.3
At4g29780.1 68417.m04241 expressed protein 29 2.3
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 29 2.3
At4g09640.1 68417.m01584 expressed protein several hypothetical ... 29 4.0
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 29 4.0
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 28 5.3
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 28 5.3
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At3g23870.1 68416.m03000 permease-related low similarity to puri... 28 5.3
At1g34470.1 68414.m04283 permease-related low similarity to puri... 28 5.3
At3g10940.1 68416.m01319 protein phosphatase-related similar to ... 28 7.1
At1g71900.1 68414.m08312 expressed protein 28 7.1
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 27 9.3
At1g04050.1 68414.m00392 SET domain-containing protein / suppres... 27 9.3
>At4g38730.1 68417.m05486 expressed protein
Length = 326
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 547
FN + PI+Y FT L ++ I+FK N Q D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271
>At5g62000.3 68418.m07784 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 704 SCWHTRNTATRFTCAYSIHSSSDQFFISASQY 609
+ WH +T T FT Y +S +F + QY
Sbjct: 289 TAWHAISTGTMFTVYYKPRTSPSEFIVPFDQY 320
>At5g62000.2 68418.m07783 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 704 SCWHTRNTATRFTCAYSIHSSSDQFFISASQY 609
+ WH +T T FT Y +S +F + QY
Sbjct: 289 TAWHAISTGTMFTVYYKPRTSPSEFIVPFDQY 320
>At5g62000.1 68418.m07782 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 704 SCWHTRNTATRFTCAYSIHSSSDQFFISASQY 609
+ WH +T T FT Y +S +F + QY
Sbjct: 289 TAWHAISTGTMFTVYYKPRTSPSEFIVPFDQY 320
>At4g29990.1 68417.m04266 light repressible receptor protein kinase
identical to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 876
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 403 VKMNEDTPPFY-FINTRDNFRDNIAEHVFDMLLERHGSFENYPIVNTA---FINSLIVNG 570
V + E+ PFY F +TR D + + +++L+R G PI+N IN +
Sbjct: 303 VILAENFRPFYLFTDTRSTV-DPVGRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLP 361
Query: 571 FKYNQVDDHVVCEYCEAEIKNWSEDECI 654
VD ++ KNW D C+
Sbjct: 362 TDQQDVDAMTKIKFKYRVKKNWQGDPCV 389
>At4g29780.1 68417.m04241 expressed protein
Length = 540
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 9 IINMDGSVVSMCVDNAFAYTTDDLLKNISFSHSKCA 116
++N DG +C+ N + T D +L+ S S + A
Sbjct: 365 VVNADGIFTDVCIGNPGSLTDDQILEKSSLSRQRAA 400
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 707 QSCWHTRNTATRFTCAYSIHSSSDQFFISAS 615
+SCWH + T + FTC S +S F ++ S
Sbjct: 437 KSCWHDKITGSLFTCEVSDGNSGPIFKVTRS 467
>At4g09640.1 68417.m01584 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 386
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 553
FNT V PI+Y FT L ++ +I+FK + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 226 ILKLNFCNSLIEPTSTDLSINPLLN 152
IL L FC SL+E S+ ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 183 DVGSISELQKFNFKINRLTSYISNIFE-YEFVVLEHNLSTVHVINAETKTKLGHINVSLN 359
+VGS+ +LQK N N+L S+ S + + VL+ +++ ET KL + + LN
Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRL-LN 483
Query: 360 QNDPNVL 380
+ N++
Sbjct: 484 LENNNLV 490
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 226 ILKLNFCNSLIEPTSTDLSINPLL 155
ILKL FC SL+E S+ ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 30 VVSMCVDNAFA-YTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFI 170
V S+ +N FA D LLK +S + K P+K Q V ++ S+G I
Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691
>At3g23870.1 68416.m03000 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007; contains 9
predicted transmembrane domains; contains Pfam PF05653:
Protein of unknown function (DUF803); identified as
COG0697, Permeases of the drug/metabolite transporter
(DMT) superfamily
Length = 335
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT V P++Y FT +I +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266
>At1g34470.1 68414.m04283 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007
Length = 368
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT V PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277
>At3g10940.1 68416.m01319 protein phosphatase-related similar to
protein phosphatase PTPKIS1 protein (GI:11595504)
[Arabidopsis thaliana]
Length = 282
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 538 TAFINSLIVNGFKYNQVD-DHVVCEYCEAEIKNWSEDECIEYAHVNLVAVLRVCQQ 702
T + LIV D DH+ E A I N +D+ IEY ++L +++R C++
Sbjct: 94 TLIRDELIVGSQPQKPEDIDHLKQEQNVAYILNLQQDKDIEYWGIDLDSIVRRCKE 149
>At1g71900.1 68414.m08312 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT + PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 657 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 571
FNT V P++Y FT ++ +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266
>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
of variegation related 1 (SUVR1) identical to suppressor
of variegation related 1 [Arabidopsis thaliana]
GI:15004614; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA trithorax 3
(ATX3) partial cds GI:15217142
Length = 630
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 45 VDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLK 149
VDN FAYT D LLK F ++ + + Q VL+
Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,154
Number of Sequences: 28952
Number of extensions: 260336
Number of successful extensions: 729
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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