Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f09
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 214 4e-56
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.0
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 8.0
Z14092-8|CAA78471.1| 208|Caenorhabditis elegans Hypothetical pr... 27 8.0
X13689-1|CAA31979.1| 208|Caenorhabditis elegans protein ( Caeno... 27 8.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 8.0
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 8.0
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 214 bits (522), Expect = 4e-56
Identities = 100/143 (69%), Positives = 117/143 (81%)
Frame = +1
Query: 22 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 201
M++QTER+F KQPTV LN K I + S+K RY ++VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59
Query: 202 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 381
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+
Sbjct: 60 AGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHP 119
Query: 382 GDIVTIGECRPLSKTVRFNVLKV 450
GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 120 GDLVTIGECRPLSKTVRFNVLKV 142
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 246 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 365
S+NED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 SLSSKMADQTERSFQKQPTVFLNRKKG-IGVKRSRKPLRYHKDVGLGFKTPREAIEGTYI 183
++ SK+ R F+K+ + G G+K R+ R + K RE +
Sbjct: 6 TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65
Query: 184 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 279
D K F GN +R + GV+ + KM+ V+
Sbjct: 66 DPKRLFEGNALLRRLVKIGVLDETKMKLDYVL 97
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 444 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 340
+++E CF Q F D +N+T L + + R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z14092-8|CAA78471.1| 208|Caenorhabditis elegans Hypothetical
protein R107.7 protein.
Length = 208
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 225 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 91
+ D + G ++ ++ LN L GS ETE + + LHT
Sbjct: 55 SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99
>X13689-1|CAA31979.1| 208|Caenorhabditis elegans protein (
Caenorhabditis elegansgst-1 mRNA for glutathione
S-transferase P subunit. ).
Length = 208
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 225 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 91
+ D + G ++ ++ LN L GS ETE + + LHT
Sbjct: 55 SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 51 KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 158
K TY +++P + C EQ C P Q P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,953
Number of Sequences: 27780
Number of extensions: 236364
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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