BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10f09 (520 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 214 4e-56 Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 2.0 Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.0 U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 28 3.5 Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 8.0 Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 8.0 Z14092-8|CAA78471.1| 208|Caenorhabditis elegans Hypothetical pr... 27 8.0 X13689-1|CAA31979.1| 208|Caenorhabditis elegans protein ( Caeno... 27 8.0 AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 8.0 AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 8.0 >Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical protein F40F11.1 protein. Length = 155 Score = 214 bits (522), Expect = 4e-56 Identities = 100/143 (69%), Positives = 117/143 (81%) Frame = +1 Query: 22 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 201 M++QTER+F KQPTV LN K I + S+K RY ++VGLGFK PR+A+EGTYIDKKCP+ Sbjct: 1 MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59 Query: 202 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 381 GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+ Sbjct: 60 AGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHP 119 Query: 382 GDIVTIGECRPLSKTVRFNVLKV 450 GD+VTIGECRPLSKTVRFNVLKV Sbjct: 120 GDLVTIGECRPLSKTVRFNVLKV 142 >Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical protein C27C12.4 protein. Length = 450 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 246 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 365 S+NED E+ DP LP + + E +R+ +ALL Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238 >Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical protein F40F8.10 protein. Length = 189 Score = 29.1 bits (62), Expect = 2.0 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Frame = +1 Query: 7 SLSSKMADQTERSFQKQPTVFLNRKKG-IGVKRSRKPLRYHKDVGLGFKTPREAIEGTYI 183 ++ SK+ R F+K+ + G G+K R+ R + K RE + Sbjct: 6 TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65 Query: 184 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 279 D K F GN +R + GV+ + KM+ V+ Sbjct: 66 DPKRLFEGNALLRRLVKIGVLDETKMKLDYVL 97 >U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical protein F47D12.5 protein. Length = 633 Score = 28.3 bits (60), Expect = 3.5 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 444 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 340 +++E CF Q F D +N+T L + + R M+ H Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160 >Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein K08E5.3a protein. Length = 3767 Score = 27.1 bits (57), Expect = 8.0 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352 +C + + AA T TT I +NG +C C+ Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595 >Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical protein K08E5.3a protein. Length = 3767 Score = 27.1 bits (57), Expect = 8.0 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352 +C + + AA T TT I +NG +C C+ Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595 >Z14092-8|CAA78471.1| 208|Caenorhabditis elegans Hypothetical protein R107.7 protein. Length = 208 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 225 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 91 + D + G ++ ++ LN L GS ETE + + LHT Sbjct: 55 SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99 >X13689-1|CAA31979.1| 208|Caenorhabditis elegans protein ( Caenorhabditis elegansgst-1 mRNA for glutathione S-transferase P subunit. ). Length = 208 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 225 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 91 + D + G ++ ++ LN L GS ETE + + LHT Sbjct: 55 SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99 >AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell adhesion receptorMUA-3 precursor protein. Length = 3767 Score = 27.1 bits (57), Expect = 8.0 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 257 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 352 +C + + AA T TT I +NG +C C+ Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595 >AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density lipoprotein receptorrelated protein 2 protein. Length = 2192 Score = 27.1 bits (57), Expect = 8.0 Identities = 11/36 (30%), Positives = 15/36 (41%) Frame = +3 Query: 51 KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 158 K TY +++P + C EQ C P Q P Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,499,953 Number of Sequences: 27780 Number of extensions: 236364 Number of successful extensions: 695 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 644 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 693 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1007108110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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