Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f09
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 208 2e-54
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 203 6e-53
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 198 2e-51
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.35
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.47
At5g17670.1 68418.m02071 expressed protein 27 5.7
At4g26980.1 68417.m03882 expressed protein 27 5.7
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.7
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 7.6
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 208 bits (508), Expect = 2e-54
Identities = 98/144 (68%), Positives = 118/144 (81%), Gaps = 1/144 (0%)
Frame = +1
Query: 22 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 198
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 199 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 378
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119
Query: 379 IGDIVTIGECRPLSKTVRFNVLKV 450
GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 203 bits (495), Expect = 6e-53
Identities = 94/144 (65%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Frame = +1
Query: 22 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 198
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 199 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 378
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 379 IGDIVTIGECRPLSKTVRFNVLKV 450
GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 198 bits (482), Expect = 2e-51
Identities = 93/144 (64%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Frame = +1
Query: 22 MADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 198
MA+QTE++F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 199 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 378
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 379 IGDIVTIGECRPLSKTVRFNVLKV 450
GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 238 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 414
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 415 LSKTVRFNVLKV 450
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 226 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 405
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 406 CRPLSK 423
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.35
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 226 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 405
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 406 CRPLSKTVRFNVLKV 450
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 112 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 198
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 158 RGVLKPRPTSLWYLN 114
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 148 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 252
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 223 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 339
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 130 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRT 270
D+G+GF ++G +D +G+ S+R R++ TG + + ++ T
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLEST 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,613
Number of Sequences: 28952
Number of extensions: 217899
Number of successful extensions: 523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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