Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f03
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 29 2.9
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 3.9
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 3.9
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 28 5.1
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6) 27 8.9
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 454 DSTLITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYGSRDHV 582
D + EE++ S + + E G V +LW GSR HV
Sbjct: 420 DDLSLHNEEEVAATPSSCVGQVASIDEAGNVHILWIDGSRSHV 462
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Frame = +2
Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
AT T + T TV K CAT T N +S +C++ TC +A
Sbjct: 31 ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90
Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
TN +C + +T +S ++A +
Sbjct: 91 TNTKCYSATRATVATNTKCYSATRATV 117
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Frame = +2
Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
AT T + T TV K CAT T N +S +C++ TC +A
Sbjct: 31 ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90
Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
TN +C + +T +S ++A +
Sbjct: 91 TNTKCYSATRATVATNTKCYSATRATV 117
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +2
Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQCIRFL 361
AT T + T TV K CAT T +S ATC +ATN +C
Sbjct: 316 ATMATSTKCYSVTCPTVATNTKGYSVMCATVATNTKCYS-----ATCATVATNTKCYSAT 370
Query: 362 KNGFCCHTTKWSLSKANL 415
+ +T +S + A +
Sbjct: 371 RATVATNTKCYSATCATM 388
>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 508 YDSLQELHEMGCVLVLWSYGSRDH-VAHSMR 597
Y++ Q++ EM C+ +LW++ H H+MR
Sbjct: 224 YNNEQQMLEMHCLSLLWNFSETSHDRLHAMR 254
>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 415 LTWGFPHVVVFDLDSTL 465
LTWGFP V FD+ S +
Sbjct: 178 LTWGFPVVACFDMTSAI 194
>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/63 (19%), Positives = 28/63 (44%)
Frame = +1
Query: 349 YSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYDSLQEL 528
Y + W + ++ ++ ++ G P D DS + E + + + FV+D L +
Sbjct: 114 YKCHEAWLAVRDERIANINGPFVSTGKPSPSSIDFDSKKVAEYQSSEGKKIFVFDDLYDK 173
Query: 529 HEM 537
++
Sbjct: 174 EDL 176
>SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)
Length = 235
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 528 QFLQAVIHKRISNLNLLLFGYESAVQIEHDHVRKS 424
+FL + +H+R+ L LLF ES +Q+ H RK+
Sbjct: 96 EFLWSPMHQRL--LGDLLFAIESDLQVWRSHTRKT 128
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 181 CNDPHLCKIIENNYNYCMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFL 360
C +LCKII++NY + + F N+ D+ I + F+T L ++ K +Y+F
Sbjct: 258 CLTNYLCKIIKDNYLWQLIDFPTRGRNILDLILTIDQ-FRTR-LEYLKKTKTKRVVYNFK 315
Query: 361 K-EW 369
+ +W
Sbjct: 316 RADW 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,198,497
Number of Sequences: 59808
Number of extensions: 477848
Number of successful extensions: 1217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -