Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f03
         (606 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2735|AAZ52804.1|  180|Drosophila melanogaster CG33724-P...    31   1.2  
AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p pro...    29   3.7  
AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA...    29   3.7  
AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-P...    29   3.7  
AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    28   8.6  
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    28   8.6  

>AE013599-2735|AAZ52804.1|  180|Drosophila melanogaster CG33724-PA
           protein.
          Length = 180

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/96 (26%), Positives = 38/96 (39%)
 Frame = +2

Query: 128 NTLALKSINFLNM*YFNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQ 307
           N  A K   F N  Y +F   ++      TT   +C +  R  T    +G +       +
Sbjct: 90  NAAASKPCEFFNRYYISFFLVKSTESNLPTTGAEMCPF--RKGTYFVKNGVV-----STE 142

Query: 308 CWATCVCLATNRQCIRFLKNGFCCHTTKWSLSKANL 415
            W   V    NR  I +LKNG C    + ++S A +
Sbjct: 143 DWPPIVFKGLNRFTISYLKNGECVGGVQLTISIAEI 178


>AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 571 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 482
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 571 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 482
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-PA
           protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 55  WICLRLNDAIIKRHVLVLSEY--ADLKYLGFEKYKFFE 162
           W  LRL++  I RHVL+L  +  A   YLG  + ++ E
Sbjct: 4   WHSLRLSNRYISRHVLLLLRFYLAQFYYLGLMRLRYDE 41


>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
            isoform B protein.
          Length = 2968

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +2

Query: 233  CKYLKRPPT-----TCATSGTILNAHSKRQCWATCVCLATNRQCIRFLKNG 370
            C  L R PT     +C +S T+  A        T  C A N  CI  L+NG
Sbjct: 2776 CNELSRLPTEGECLSCDSSKTLECAQDPTAVLTTITCHAPNSDCITRLENG 2826


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
            isoform A protein.
          Length = 2931

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +2

Query: 233  CKYLKRPPT-----TCATSGTILNAHSKRQCWATCVCLATNRQCIRFLKNG 370
            C  L R PT     +C +S T+  A        T  C A N  CI  L+NG
Sbjct: 2739 CNELSRLPTEGECLSCDSSKTLECAQDPTAVLTTITCHAPNSDCITRLENG 2789


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,162,451
Number of Sequences: 53049
Number of extensions: 677132
Number of successful extensions: 1887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)