Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f03
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    32   0.26 
At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    30   1.0  
At4g38360.1 68417.m05423 expressed protein contains Pfam profile...    30   1.0  
At5g59020.1 68418.m07393 expressed protein                             29   1.8  
At4g16170.1 68417.m02455 expressed protein                             29   1.8  
At5g62720.2 68418.m07871 integral membrane HPP family protein co...    29   3.2  
At5g62720.1 68418.m07872 integral membrane HPP family protein co...    29   3.2  
At1g04570.1 68414.m00450 integral membrane transporter family pr...    29   3.2  

>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 142 EKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPAD 258
           EK + F Y    F  +P  C+ +E NYNY M  FK   D
Sbjct: 314 EKLRDFRYGSNYFTGEPATCRYLE-NYNYTMNCFKDVRD 351


>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 286 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 396
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At4g38360.1 68417.m05423 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 304

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 286 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 396
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 QKRIFDVGISARGRVRFGQHSHNRRGANSNSRFVCV*Q 515
           Q+++  VG+   GR+   QHSHNR   +  SRF  V Q
Sbjct: 33  QEKLLSVGVLDWGRLEKWQHSHNR--VSMKSRFPMVSQ 68


>At4g16170.1 68417.m02455 expressed protein
          Length = 429

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 403 KSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYD-SLQELHEMGCVLVLWSYGSRDH 579
           K+ +L   FPH +V  L+  L T EEQ+    S +YD  L + H     ++  +  ++ +
Sbjct: 314 KTTTLPEPFPHELVERLEKYLDTVEEQLVDLSSLLYDHKLYDAHLNSSEILQTTMFTQQY 373

Query: 580 VAH 588
           V H
Sbjct: 374 VEH 376


>At5g62720.2 68418.m07871 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 200

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 338 LLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICIQ*L*LFSIIL 201
           LLLS  +WP  G   A  +L  M  MLS   +++ +  L   S IL
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAIL 135


>At5g62720.1 68418.m07872 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 243

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 338 LLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICIQ*L*LFSIIL 201
           LLLS  +WP  G   A  +L  M  MLS   +++ +  L   S IL
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAIL 135


>At1g04570.1 68414.m00450 integral membrane transporter family
           protein contains 8 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to hypothetical
           protein GB:AAD38263
          Length = 542

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +1

Query: 307 VLGHMC---VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEE 477
           VLG++    +L   PP  SFL    LL    VVSL S+  ++G P +   +  S L + +
Sbjct: 232 VLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIA--ETSSVLESVK 289

Query: 478 EQI-QIRDSFVYDSLQE 525
           +QI  ++++   D + +
Sbjct: 290 KQISNLKEAIQADEISQ 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,890
Number of Sequences: 28952
Number of extensions: 306677
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)