Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10f02
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 36 0.016
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 27 7.5
08_02_1090 + 24254172-24254624 27 10.0
05_07_0203 + 28391707-28392165 27 10.0
03_02_0560 + 9462996-9463454 27 10.0
01_06_1288 - 36007432-36007851 27 10.0
01_01_0366 + 2871188-2871655 27 10.0
01_01_0364 - 2856598-2857059 27 10.0
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 27 10.0
01_01_0360 - 2837046-2837507 27 10.0
01_01_0358 - 2819235-2819696 27 10.0
01_01_0331 + 2685802-2686263 27 10.0
01_01_0329 + 2673479-2673940 27 10.0
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 35.9 bits (79), Expect = 0.016
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 187 EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 363
++ DK +VE++DSS ++ + Q D L + LL N L VDD T+DE+ L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457
Query: 364 ANFLVTKLDE 393
L +KL+E
Sbjct: 1458 NMVLKSKLEE 1467
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 328 DNVLTQDELSFLANFLVTKLDEA 396
D+VL D F+ NFL T LDEA
Sbjct: 458 DSVLNGDLDDFILNFLSTSLDEA 480
>08_02_1090 + 24254172-24254624
Length = 150
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 72 KQVHPDIGISSKAMSIMNSFINDIFE 97
>05_07_0203 + 28391707-28392165
Length = 152
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>03_02_0560 + 9462996-9463454
Length = 152
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>01_06_1288 - 36007432-36007851
Length = 139
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 61 KQVHPDIGISSKAMSIMNSFINDIFE 86
>01_01_0366 + 2871188-2871655
Length = 155
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 77 KQVHPDIGISSKAMSIMNSFINDIFE 102
>01_01_0364 - 2856598-2857059
Length = 153
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 612 KQVHPDIGISSKAMSIMNSFINDIFE 637
>01_01_0360 - 2837046-2837507
Length = 153
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0358 - 2819235-2819696
Length = 153
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0331 + 2685802-2686263
Length = 153
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0329 + 2673479-2673940
Length = 153
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,612,289
Number of Sequences: 37544
Number of extensions: 153323
Number of successful extensions: 412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -