Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10f02
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    29   1.2  
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...    27   4.8  
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...    27   4.8  
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    27   4.8  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   6.3  
At4g27660.1 68417.m03978 expressed protein  ; expression support...    27   6.3  
At4g10890.1 68417.m01772 expressed protein                             27   8.4  

>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/71 (25%), Positives = 40/71 (56%)
 Frame = +1

Query: 124 VYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 303
           V  D   ++  ++ I + L+D+ E++  Y+L    DSS+K+ R+  +    ++  + ++ 
Sbjct: 583 VVADSQQTVAGRKRIRVILSDD-ESETEYELGCPKDSSHKVLRQNEEVSEESMYFDGAIN 641

Query: 304 FTLHRFVDDNV 336
           +T +R + DNV
Sbjct: 642 YTDNRAIQDNV 652


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 160 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 267
           +++ +FL+ +++ND  YKL   V    KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 160 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 267
           +++ +FL+ +++ND  YKL   V    KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIE 195
           +QV+PD   + K   V+NMF+ D  E
Sbjct: 160 KQVHPDLGITSKAMTVVNMFMGDMFE 185


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 112 LCEQVYPDKDFSLKLKRV---INMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 282
           LC Q +PD++F  +  +    +N +L+    N  +Y  V+  +  + L  ++     H L
Sbjct: 92  LCRQTHPDREFVEEANKAAIEMNDYLHHLNTNHTLYAAVKKAEQDSNLLTKEASRTAHHL 151


>At4g27660.1 68417.m03978 expressed protein  ; expression supported
           by MPSS
          Length = 208

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 330 VVHESMQCKCYT-DIV*QCMY 271
           +VHE  QC CY  D+V  C Y
Sbjct: 94  IVHEKGQCYCYVCDVVAPCAY 114


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 154 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDN 333
           L+  + MFL +  +N  +  +V     S  + +R++D ++ ALL   + T       D  
Sbjct: 16  LEESVAMFLEEVDKNRTVRDIVARYQQSLNVVKRKIDDVLSALLKFAADTLKSQESHDTK 75

Query: 334 VL 339
           VL
Sbjct: 76  VL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,213,716
Number of Sequences: 28952
Number of extensions: 138093
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)