Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e24
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             190   7e-49
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         151   5e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   2.6  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   2.6  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   6.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   6.1  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   8.0  
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   8.0  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   8.0  
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   8.0  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)                        28   8.0  
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)                    28   8.0  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   8.0  
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  190 bits (464), Expect = 7e-49
 Identities = 107/217 (49%), Positives = 130/217 (59%), Gaps = 37/217 (17%)
 Frame = +3

Query: 123 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 212
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 213 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 371
             R   NK          ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 551
                                   EYNVE VD  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 552 GAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 662
           GAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFG 233


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  151 bits (366), Expect = 5e-37
 Identities = 69/112 (61%), Positives = 80/112 (71%)
 Frame = +3

Query: 249 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 428
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG                     
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 429 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 584
                EYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 210 LIVRLSNKDVTCQVAYSRIEGD-HIVC 287
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 146 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 39
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 258 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 356
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 619  DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 521
            D+   P   +M   T+RPP T  F+   T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130  RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
            RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 1200 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 1241


>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 824

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 663 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 704


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 263 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 304


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 356 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 397


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 78  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 173
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 97  RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKNR 138


>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
          Length = 348

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 110 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 151


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 63   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 149
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
           RRL+    Y  +Y   F TL  PI+ + +T+ +  T TK K R
Sbjct: 755 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 796


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,922,032
Number of Sequences: 59808
Number of extensions: 470914
Number of successful extensions: 1402
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)