Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e21
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...   147   1e-36
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    58   1e-09
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    29   0.75 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.7  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    27   2.3  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   4.0  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   5.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.2  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    25   9.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.2  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score =  147 bits (356), Expect = 1e-36
 Identities = 71/119 (59%), Positives = 93/119 (78%)
 Frame = +1

Query: 283 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 462
           AI KGN E ARI+A NAIR++ ++LN L++S+R+DAVSSR+QTA+T R V+ +MAGVV+ 
Sbjct: 17  AITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRG 76

Query: 463 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
           MD AMK+MNLE IS +MDKFE+QF+D++VQ+ YM  AM   T    PQ DVD L+Q VA
Sbjct: 77  MDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVA 135


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 35/161 (21%), Positives = 70/161 (43%)
 Frame = +1

Query: 154 GNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENA 333
           G +     +  H  +L  A +EL+R                  + + GN   ARI A + 
Sbjct: 10  GGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDL 69

Query: 334 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLM 513
           +R +N     +    ++ A+S R+QT  T+ ++  SM G  + +    KSMN+  ++ + 
Sbjct: 70  MRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARIT 129

Query: 514 DKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 636
            +FE + E ++ +   ++  M         + + D L+ +V
Sbjct: 130 QQFERENEIMEQRQEMIDENMDDALEED-DEEEADELVNKV 169


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 427 KVTNSMAGVVKAMDAAM-KSMNLEKISTLMDKFESQFE 537
           ++ NS   V K +DA+   S+NLEK+S L D+ + +F+
Sbjct: 250 QLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFD 287


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 487  NLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVP 603
            ++  +STL DK+ +   DLD  S Y E      T T +P
Sbjct: 1291 SISSVSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMP 1329


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +1

Query: 322 AENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGV------VKAMDAAMKS 483
           A N +RQK    + L+   +     +  Q A+TT  + N+MA V       + + +  K+
Sbjct: 65  AMNVLRQKKIYESQLQQLQQQSF--NMEQAAMTTESLKNTMATVQTMQETARQLKSQSKN 122

Query: 484 MNLEKISTLMDKFESQFE 537
           +++EKI  L D+ +   +
Sbjct: 123 VSIEKIEKLQDEIQDYMD 140


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 478 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQ 633
           ++  + ++S  +DK E  F++ D Q++   NA+S        Q +V  L +Q
Sbjct: 597 EAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNHEPPQEQANVAELNEQ 648


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 463 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTT 591
           ++ A++S + E +S   D+  S  + LDV    ++NA+ QT T
Sbjct: 203 LEKALES-DYEDVSIQFDRLASLDQALDVPIESIQNALQQTGT 244


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 289  QKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMD 468
            Q+  +  ARI  E  +R  N  LN+ ++ A    + S ++ +L +  V + M  V  A  
Sbjct: 1820 QRDIVSAARISCEMLLRVINDLLNFSKLEAGKVTLESDLEFSLES-VVCDCMQSVYSA-- 1876

Query: 469  AAMKSMNL 492
             A K +NL
Sbjct: 1877 CAEKGINL 1884


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 541 LDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
           + +Q   +EN   QT+TT   + D+D   Q +A
Sbjct: 158 VSLQDKEVENPDEQTSTTVFRKEDIDRYEQTIA 190


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 463 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMS 579
           +  A+     EK   +   +ES F++ DVQ  YM +  S
Sbjct: 771 LSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRS 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,888
Number of Sequences: 5004
Number of extensions: 37126
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)