Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e21
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8227| Best HMM Match : No HMM Matches (HMM E-Value=.)              182   3e-46
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)                 53   2e-07
SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_8227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score =  182 bits (442), Expect = 3e-46
 Identities = 85/113 (75%), Positives = 103/113 (91%)
 Frame = +1

Query: 301 MEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMK 480
           MEGA+IH ENAIRQKNQ+LN++RMS+R+DAV+ RVQTA+T ++VT+SM GVVK+MDAA+K
Sbjct: 1   MEGAKIHGENAIRQKNQSLNFMRMSSRIDAVAQRVQTAVTMKQVTSSMGGVVKSMDAALK 60

Query: 481 SMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
           SMNLEK+S LMDKFE QFEDLDVQS+ M+NAMS TTT TVPQG VD+L+QQVA
Sbjct: 61  SMNLEKVSALMDKFEKQFEDLDVQSAAMDNAMSSTTTLTVPQGQVDSLMQQVA 113


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/126 (26%), Positives = 61/126 (48%)
 Frame = +1

Query: 199 LKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSA 378
           L  A+++L+R                    + G M+  RI A++ +R +     ++ M A
Sbjct: 24  LNRAMRDLDRERSKMEQQEKKIINDIKKMAKMGQMDAVRIMAKDLVRTRRYVKKFILMKA 83

Query: 379 RVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSS 558
            + AVS ++QT  +   +  +M GV KAM    + + L +I  +M +FE Q E +D++  
Sbjct: 84  NIQAVSLKIQTLRSNNAMAQAMKGVTKAMATMNRQLKLPEIQKIMMEFEKQSEIMDMKEE 143

Query: 559 YMENAM 576
            M +A+
Sbjct: 144 MMNDAI 149


>SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)
          Length = 132

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/47 (53%), Positives = 30/47 (63%)
 Frame = +1

Query: 499 ISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
           IS  M+KFE  FEDLDV +  ME +M   TT T PQ  V+ L+ QVA
Sbjct: 1   ISATMEKFEGLFEDLDVNTQVMEGSMGAATTLTTPQDQVEALINQVA 47


>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
 Frame = +1

Query: 313 RIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTT--------------RKVTNSMAG 450
           +I  +NA + K  ALN L+   R++   +++   L+T               +V  +M+ 
Sbjct: 48  QIAKQNASKNKRTALNALKRKKRLEKQLNQIDGTLSTIEFQREALEGANTNTEVLKNMSY 107

Query: 451 VVKAMDAAMKSMNLEKISTLMDKFESQFEDLD 546
             KA+ AA + ++++ +  +MD  + Q E  D
Sbjct: 108 AAKALKAAHQQLDVDDVHDMMDDIQEQTELAD 139


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +1

Query: 334 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSM 486
           I+ + + +N LR+SAR D ++S    AL   +  N + GVVK  +  + ++
Sbjct: 439 IKPRWETIN-LRLSAREDQIASVQPLALAYEEALNDVEGVVKGAETHLSNL 488


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 439  SMAGVVKAMDAAMKSMNLEKIST-LMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDV 615
            SM  +   +D+   S   EKIS+  M    S  +  D +SS     MSQ+ +  +P+ D+
Sbjct: 2967 SMETLHHFLDSLSPSTTTEKISSDSMKSLNSIVKASDGKSSLKSVRMSQSESQAMPRMDL 3026

Query: 616  DNLLQQVA 639
            D+   +VA
Sbjct: 3027 DHTSSKVA 3034


>SB_54299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 457 KAMDAAMKSM-NLEKISTLMDKFESQFEDL 543
           KA+D  + S+ N+  I TLM ++ S+FEDL
Sbjct: 13  KAIDTWIDSIRNMPDIETLMQEWPSEFEDL 42


>SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = +1

Query: 322 AENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVV----KAMDAAMKSMN 489
           A+  ++ + Q    + +S+++  +  + Q   +T     +MAG +    +AM A  K M+
Sbjct: 35  AKQLLQLRKQKNKNMSVSSKITGIGYQAQAMQSTA----TMAGAMSKTSQAMGAMNKQMD 90

Query: 490 LEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 636
              +   +  FE +   +D+    M   +      +  + + D ++ QV
Sbjct: 91  PASLQKTLQNFERESAKMDMNEEMMGETLDSVLDESGDEEEQDAIVNQV 139


>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 454 VKAMDAAMKS--MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQT 585
           + AMD  MKS  + LE +S   +    QFE    QSS  EN   +T
Sbjct: 275 ISAMDDKMKSLRLELESVSKQKNDLSKQFE---TQSSTFENTSRET 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,745
Number of Sequences: 59808
Number of extensions: 261323
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)