Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e21
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical ...   181   3e-46
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    70   1e-12
Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical...    30   1.2  
U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    28   6.5  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    28   6.5  
AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical
           protein F23C8.6 protein.
          Length = 205

 Score =  181 bits (441), Expect = 3e-46
 Identities = 88/163 (53%), Positives = 117/163 (71%)
 Frame = +1

Query: 151 LGNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAEN 330
           +G   SS A+EKHLF+LKFA K+LE+N+                AI+KGN E A++HAEN
Sbjct: 1   MGAGESSMALEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKKGNKEVAQVHAEN 60

Query: 331 AIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTL 510
           AIR+KN+A+NY++M+AR+DAV++RVQTA T ++VT SM+GVVKAM++AMKSMNLEK+  L
Sbjct: 61  AIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNLEKVQQL 120

Query: 511 MDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
           MD+FE  FEDLDV +  ME  M  TT    P+  VD L+ + A
Sbjct: 121 MDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIAEAA 163


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 37/146 (25%), Positives = 71/146 (48%)
 Frame = +1

Query: 199 LKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSA 378
           L  A++EL+R                    +K  M+  ++ A++ +R +     ++ M A
Sbjct: 22  LNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVKVMAKDLVRTRRYIKKFIVMKA 81

Query: 379 RVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSS 558
            + AVS +VQT  +   + ++M GV KAM +  + +NL +I  +M +FE Q E +D++  
Sbjct: 82  NIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEE 141

Query: 559 YMENAMSQTTTTTVPQGDVDNLLQQV 636
            M +A+         + + D ++ QV
Sbjct: 142 VMGDAIDDALGDAGDEEETDQIVNQV 167


>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 54/115 (46%)
 Frame = +1

Query: 292 KGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDA 471
           KG+ + AR  A+  ++ +NQ    + MSAR+  V ++     +  K+ ++M   VK M A
Sbjct: 51  KGHNDAARHLAKQLVQLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKA 110

Query: 472 AMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 636
               M LEK++  M +F+   E + +    M + +           + D ++ QV
Sbjct: 111 MNAQMPLEKVAANMREFQMAQEKMGLTEEMMNDTLDSILDAPGDADEQDAIVNQV 165


>AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical
           protein Y47H9C.11 protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 484 MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTT 597
           + L    +L  KF    ED D  +SY+ENAM Q  T T
Sbjct: 156 LKLNNQESLQQKFRKSDEDED-SNSYLENAMDQLETIT 192


>U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical
           protein ZC196.4 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 493 EKISTLMDKFESQFEDLDVQSSYMENAM 576
           EK+++L+D FE+ F  L   S   ENA+
Sbjct: 305 EKVASLLDTFETLFNQLGELSKISENAL 332


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 399 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 530
           QS+ S    +G   NG  + +NG   + +  R+N Y NGQ RE+
Sbjct: 483 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 524


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 399 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 530
           QS+ S    +G   NG  + +NG   + +  R+N Y NGQ RE+
Sbjct: 385 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 426


>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 436 NSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQS 555
           +S+A  VK    A    + +  + L+DKF SQ+  LD++S
Sbjct: 156 SSIADKVKGFKGAYVVPDGDPYTNLLDKFVSQYVTLDIES 195


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/108 (25%), Positives = 49/108 (45%)
 Frame = +1

Query: 298 NMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAM 477
           N EGA I AE      N AL  LR+  R + ++     AL +    N+   ++  +DA+ 
Sbjct: 419 NCEGAIILAECIA--DNIAL--LRVDIRDNPIALAGLLALHSAMKMNTSITLLN-IDASC 473

Query: 478 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDN 621
             ++ EK+    D+FE  F ++       ++ + +  T T    + D+
Sbjct: 474 VKLSSEKVREYQDEFERYFREIQTYCDRNKDDVLKRLTVTFDDEEGDS 521


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/108 (25%), Positives = 49/108 (45%)
 Frame = +1

Query: 298 NMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAM 477
           N EGA I AE      N AL  LR+  R + ++     AL +    N+   ++  +DA+ 
Sbjct: 419 NCEGAIILAECIA--DNIAL--LRVDIRDNPIALAGLLALHSAMKMNTSITLLN-IDASC 473

Query: 478 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDN 621
             ++ EK+    D+FE  F ++       ++ + +  T T    + D+
Sbjct: 474 VKLSSEKVREYQDEFERYFREIQTYCDRNKDDVLKRLTVTFDDEEGDS 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,042,284
Number of Sequences: 27780
Number of extensions: 206654
Number of successful extensions: 648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)