Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e21
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73030.1 68414.m08445 SNF7 family protein contains Pfam domai...   144   4e-35
At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domai...   142   1e-34
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    69   2e-12
At4g31570.1 68417.m04483 expressed protein                             30   1.1  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    29   3.4  
At1g69325.1 68414.m07952 remorin family protein contains Pfam do...    29   3.4  
At3g19370.1 68416.m02457 expressed protein                             28   4.5  

>At1g73030.1 68414.m08445 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 203

 Score =  144 bits (349), Expect = 4e-35
 Identities = 65/158 (41%), Positives = 110/158 (69%)
 Frame = +1

Query: 166 SSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQK 345
           ++  +   +F+LKF  K L+R S                AI+KGNM+GARI+AENAIR++
Sbjct: 3   NTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIRKR 62

Query: 346 NQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFE 525
           ++ +NYLR+++R+DAV +R+ T      +T SM  +VK++++++ + NL+K+S  MD FE
Sbjct: 63  SEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDSFE 122

Query: 526 SQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
            QF +++VQ+ +MENAM+ +T+ + P+G+V++L+QQVA
Sbjct: 123 KQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVA 160


>At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 203

 Score =  142 bits (345), Expect = 1e-34
 Identities = 64/158 (40%), Positives = 109/158 (68%)
 Frame = +1

Query: 166 SSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQK 345
           ++  +   +F LKF  K L+R +                AI+KGNM+GARI+AENAIR++
Sbjct: 3   NTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKR 62

Query: 346 NQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFE 525
           ++ +NYLR+S+R+DAV +R+ T      +T SM  +VK++++++ + NL+K+S  MD FE
Sbjct: 63  SEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSFE 122

Query: 526 SQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVA 639
            QF +++VQ+ +M+NAM+ +T+ + P+G+V++L+QQVA
Sbjct: 123 KQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVA 160


>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 35/143 (24%), Positives = 72/143 (50%)
 Frame = +1

Query: 208 AVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSARVD 387
           +++E+ER                    ++G M   ++ A++ IR ++Q   + ++ +++ 
Sbjct: 26  SIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQ 85

Query: 388 AVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYME 567
            VS R+QT  +T+ +  +M GV KAM    + MNL  +  +M +FE Q E +++ S  M 
Sbjct: 86  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMG 145

Query: 568 NAMSQTTTTTVPQGDVDNLLQQV 636
           +A+         + + ++L+ QV
Sbjct: 146 DAIDDALEGDEEEEETEDLVSQV 168


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = +1

Query: 307  GARIHAEN---AIRQKNQALNYLRMSARV-DAVSSRVQTALTTRKVTNSMAGVVKAMD-- 468
            GA+I AE+   A  +     + L +  R  D++  RV+  L  +   + +   V ++   
Sbjct: 2315 GAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKVTSLSDL 2374

Query: 469  AAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQ 582
             A K + +E +   +D+ ESQ EDL ++ + +E  + Q
Sbjct: 2375 LAAKDLEIEALMQALDEEESQMEDLKLRVTELEQEVQQ 2412


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 532 FEDLDVQSSYMENAMSQTTTTTVPQGD 612
           F DLD+  SY E  + Q +TT V  GD
Sbjct: 117 FNDLDLAPSYEELFLQQKSTTVVGDGD 143


>At1g69325.1 68414.m07952 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 120

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 298 NMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSM 444
           ++E  ++ A    R +N+ +  +  SAR  A  SR++  L  ++  N M
Sbjct: 61  SVEKTKLKATQRFRDENERIEIIVASARAHAYESRIKEELKVKEKANLM 109


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 364 LRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSM--NLEKISTLMDKFESQFE 537
           L  S +V+ + S  +  L  RK        ++ ++A MK++  N EK+   M+  +S  E
Sbjct: 469 LTKSDKVEKIESDEKQEL--RKKLEESVEKIRNLEAEMKTLRENKEKVEAEMETEKSMKE 526

Query: 538 DLDVQSSYMENAMSQT 585
           DLD + +     +++T
Sbjct: 527 DLDTKLNITRANLNET 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,900
Number of Sequences: 28952
Number of extensions: 183439
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)