Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e20
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal prot...   284   5e-77
X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal prot...   284   5e-77
AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p pro...   284   5e-77
AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-P...   284   5e-77
AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-P...   284   5e-77
Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal prot...   270   8e-73
AY070905-1|AAL48527.1| 1051|Drosophila melanogaster RE02096p pro...    28   9.6  
AE014296-3007|AAF49271.2| 1051|Drosophila melanogaster CG13699-P...    28   9.6  

>X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  284 bits (697), Expect = 5e-77
 Identities = 133/151 (88%), Positives = 144/151 (95%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  284 bits (697), Expect = 5e-77
 Identities = 133/151 (88%), Positives = 144/151 (95%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p
           protein.
          Length = 151

 Score =  284 bits (697), Expect = 5e-77
 Identities = 133/151 (88%), Positives = 144/151 (95%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-PB,
           isoform B protein.
          Length = 151

 Score =  284 bits (697), Expect = 5e-77
 Identities = 133/151 (88%), Positives = 144/151 (95%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-PA,
           isoform A protein.
          Length = 151

 Score =  284 bits (697), Expect = 5e-77
 Identities = 133/151 (88%), Positives = 144/151 (95%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal protein
           S17 protein.
          Length = 151

 Score =  270 bits (662), Expect = 8e-73
 Identities = 127/151 (84%), Positives = 139/151 (92%)
 Frame = +1

Query: 61  MGRMHAPGKGISQSALPYRRSVPTWXKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 240
           MGRMHAPGKGISQSALPYRR+VP+W KL ADDVKEQI K G++G    QIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKAGQEGSDSLQIGIILRDSHGV 60

Query: 241 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 420
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 421 RIHRLARYYKTKSVLPPNWKYESSTASALVA 513
           RIHRLARYYKTKSVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151


>AY070905-1|AAL48527.1| 1051|Drosophila melanogaster RE02096p
           protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 163 PLHRRQSISTR*GHCGGKAAPTGRYPYQERAYDPCLRLFTKSPI*QRQQ-ENPKQ 2
           PL++RQ I    G  GG     G  P     Y      ++K P  Q+ Q +NP Q
Sbjct: 269 PLYQRQDIKPNRGGAGGSGGAGGAPPPGSSNYANNFDNYSKRPNPQQTQIQNPNQ 323


>AE014296-3007|AAF49271.2| 1051|Drosophila melanogaster CG13699-PA
           protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 163 PLHRRQSISTR*GHCGGKAAPTGRYPYQERAYDPCLRLFTKSPI*QRQQ-ENPKQ 2
           PL++RQ I    G  GG     G  P     Y      ++K P  Q+ Q +NP Q
Sbjct: 269 PLYQRQDIKPNRGGAGGSGGAGGAPPPGSSNYANNFDNYSKRPNPQQTQIQNPNQ 323


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,469,927
Number of Sequences: 53049
Number of extensions: 480624
Number of successful extensions: 1091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)