Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e19
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0156 - 15282111-15282752,15284787-15285719                       27   5.2  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    26   6.9  
10_08_0964 + 21906737-21907993                                         26   9.1  
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    26   9.1  
03_02_0129 + 5785583-5787163,5787923-5788090                           26   9.1  

>10_08_0156 - 15282111-15282752,15284787-15285719
          Length = 524

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 6   DFFLNHKIAVVHIYNGNNMALMPVGMAPRQMR 101
           D FL+  I V+  + GN+MA  P G   RQ+R
Sbjct: 106 DRFLSTTIGVI-TFGGNDMAFAPYGERWRQLR 136


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 174 DAYHDDGWFICNSH 215
           D+YHDDG  +C+ H
Sbjct: 325 DSYHDDGASLCSKH 338


>10_08_0964 + 21906737-21907993
          Length = 418

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 166 HGDLYVMHASNDTM 125
           HG+L V+HA++DTM
Sbjct: 308 HGELCVLHANSDTM 321


>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 214 WLLQINHPSS*YA-SGEHGDLYVMHASNDTMD 122
           WL++ N     +A SGEH ++   H+  DT+D
Sbjct: 220 WLMEANFLEDQFAKSGEHQNIVKAHSVIDTVD 251


>03_02_0129 + 5785583-5787163,5787923-5788090
          Length = 582

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 302 MPSDRHFELIVVFVENGQNHF*HFKTFDEVAVADKPSVVMI 180
           M +   + LI+  V   + +F   K FDE+  +DK +V +I
Sbjct: 218 MATGHSYTLILKAVATTEGYFAALKMFDEIEESDKKNVDVI 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,615,994
Number of Sequences: 37544
Number of extensions: 180867
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)