Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e19
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.44 
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   1.0  
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     28   1.8  
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  26   7.1  
SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  26   7.1  
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  26   7.1  
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  

>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 174 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 323
           DA  D  GW++    L+K+F+ S+M     + D+D   ++  +   L  NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 308
           SFD+ I   +P    ++ H  G  I  S +      S  V  IFD+DD    +T+ R+  
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371

Query: 309 GNKERGI 329
           GN   G+
Sbjct: 372 GNAFSGV 378


>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 252 PIFDEDDNQFKMTIARHLVGNKERGIKRKKK 344
           P++  D +      +  +VG KE+ +KRK+K
Sbjct: 34  PVYISDSSNLSSPNSYQIVGKKEKSVKRKRK 64


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 252  PIFDEDDNQFKMTIARHLVGNKERGIKRKKK 344
            P++  D +      +  +VG KE+ +KRK+K
Sbjct: 1081 PVYISDSSNLSSPNSYQIVGKKEKSVKRKRK 1111


>SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 253 GKTIFDILKRLMRWLLQINHPSS*YASGEHGDLYVMHASNDTMDA 119
           G  +F +++ L+R  ++ N  +   ASG HG  + + ASN  + A
Sbjct: 300 GVYLFFVMEYLLRMYVRFNDNAETGASGGHGHSHQILASNILLQA 344


>SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 170 RTR*LVCYARVERHDGRENAAVNSHLSRRHTHG 72
           R R +  ++RV+ H G  +  +  H   +HT G
Sbjct: 71  RDRTMTYHSRVKHHQGTRDRTITYHSRGKHTQG 103


>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 645

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTK 267
           HT  + +P +    + + A ATS++++ C    C FSTK
Sbjct: 408 HTQRQRKPRKGSLAEEI-AKATSTHIVVCTDENCQFSTK 445


>SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 762

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTK 267
           HT  + +P +    + + A ATS++++ C    C FSTK
Sbjct: 260 HTQRQRKPRKGSLAEEI-AKATSTHIVVCTDENCQFSTK 297


>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 847

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTK 267
           HT  + +P +    + + A ATS++++ C    C FSTK
Sbjct: 408 HTQRQRKPRKGSLAEEI-AKATSTHIVVCTDENCQFSTK 445


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 198 TIRRHDTRRANTVTCMLC 145
           T+ +H T+  +TVTC +C
Sbjct: 640 TVAKHKTKTPSTVTCYIC 657


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 18  NHKIAVVHIYNGNNM---ALMPVGMAPRQMRVNRCIFASIVSFDACI 149
           NH++AVV++         AL+P+  APR M  +     S+VS D  +
Sbjct: 315 NHRMAVVNLTAFTVQLIQALVPLEQAPRVMSSDLVTVLSLVSIDGVL 361


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 171 PDAYHDDGWFICNSHLIKRFKMSKMV 248
           P+ +HD+  F+C S    R K  K +
Sbjct: 869 PEGFHDNDVFVCESRYTNRNKSFKKI 894


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 319  SLFPTKCLAIVILN*LSSSSKMGKTIFDILKRLMRWLL 206
            SL  + C +       S+SS+  ++ FD+  RL RW L
Sbjct: 2150 SLISSSCRSSRCQRSSSTSSRSTRSFFDLKIRLRRWFL 2187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,167,316
Number of Sequences: 59808
Number of extensions: 209909
Number of successful extensions: 482
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)