Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e19
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   4.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 29   CRGPYL*RQQYGANARGYGAATNE 100
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 144 CITYKSPCSPDA 179
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 166 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFS 261
           VRP  +         AT+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 144 CITYKSPCSPDA 179
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 172 PTRIMTTDGLSATATSSN 225
           PTR  TT   + TAT+++
Sbjct: 919 PTRYSTTKSSAVTATNAS 936


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 245 GFAHFRRRRQSIQNDDR*AFSW 310
           GF  F +   S++ND+   FS+
Sbjct: 10  GFLLFWQNSASLENDNEFGFSY 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,907
Number of Sequences: 438
Number of extensions: 1928
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)