Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e19
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32910.1 68415.m04035 expressed protein                             29   0.83 
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    29   1.1  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   1.9  
At5g26720.1 68418.m03167 expressed protein                             27   3.4  
At2g39180.1 68415.m04812 protein kinase family protein contains ...    27   3.4  
At1g63530.1 68414.m07182 hypothetical protein                          27   4.4  
At5g62680.1 68418.m07866 proton-dependent oligopeptide transport...    26   5.9  
At5g52560.1 68418.m06527 UDP-N-acetylglucosamine pyrophosphoryla...    26   5.9  
At3g21170.1 68416.m02674 F-box family protein contains Pfam prof...    26   5.9  

>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 DAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDD 272
           D+Y  D ++IC  H ++R   + MV P   +DD
Sbjct: 610 DSYRRDPYYICERHALERPPRTYMVSPGRQDDD 642


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 3   RDFFLNHKIAVVHIYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 182
           RD F  HK    H++ G N +  PV   P  +       AS V+  A  T  +  S  A+
Sbjct: 162 RDVFAGHKYCERHMHRGRNRSRKPV-ETPTTVNATATSMASSVAAAATTTTATTTSTFAF 220

Query: 183 HDDG 194
              G
Sbjct: 221 GGGG 224


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 HLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGN-KERGI 329
           H I+R +  K VLP + EDD   K+T A    GN K+ GI
Sbjct: 53  HDIERIESGKYVLPKYPEDD-YVKLTEAGESKGNGKKTGI 91


>At5g26720.1 68418.m03167 expressed protein 
          Length = 134

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 225 RFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRKKK 344
           R K  K  + I D+DDNQF  T    LV +K R + + +K
Sbjct: 28  RKKKKKKDVTIVDDDDNQFDTT--NQLVKSKNRFLGKFRK 65


>At2g39180.1 68415.m04812 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 776

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 165 CSPDAYHDDGWFICNSHLIKRFKMSKM 245
           CSP     DGWF  N+ ++K  +++ +
Sbjct: 336 CSPRGNCGDGWFAFNASILKESELTSL 362


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 28  LPWSIFITATIWR*CPWVWRRDK*ELTAAFSRPSCRST 141
           +PWSI   +T  R   W W R    +  A S  S  ST
Sbjct: 119 VPWSISAYSTAGRGVEWAWARPDVAVYPASSSSSSTST 156


>At5g62680.1 68418.m07866 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 616

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 141 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIF 260
           A +T +    PD    D W +C    ++  K    VLPI+
Sbjct: 320 AILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIW 359


>At5g52560.1 68418.m06527 UDP-N-acetylglucosamine
           pyrophosphorylase-related contains weak similarity to
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (Swiss-Prot:O74933) [Candida albicans]
          Length = 614

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 341 FFSLDTSFFISN*MPSDRHFELIVVFVENGQNHF*HFKTFDEVAVADK 198
           FFS   +   +  + S    EL  + +ENGQ+H   F+ + E+ V DK
Sbjct: 9   FFSSVPALHSNLGLLSPDQIELAKILLENGQSHL--FQQWPELGVDDK 54


>At3g21170.1 68416.m02674 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 394

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 203 DKPSVVMIRVGRTR*LVCYARVERHDGRENAAV-NSHLSRRHTHGH*RHIVAVINMDHGN 27
           D P  +++ +      V  AR+     R N  + +  LS++H+    RH +A++ +DH  
Sbjct: 5   DLPEDLVVEILSRVPAVFLARLRSTSKRWNTLIKDGKLSKKHSSNAPRHSMALVLIDHKV 64

Query: 26  FMIEKEI 6
           + +   +
Sbjct: 65  YSVRSNL 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,389
Number of Sequences: 28952
Number of extensions: 144304
Number of successful extensions: 337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)